Protein

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Genbank accession
AYD79888.1 [GenBank]
Protein name
putative T1SS secreted agglutinin RTX
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MKLGNMTLMTGAQILNLRGEKRASDPTLGSLVANQEAWIWYNTTDKVYKYFDGTAIKTFGEGSSPDLSGYVKADGTTAMTGVLELSSADQSAANDVAAVSKGYVSGLLARKLSVSAEGTLAANLSAGGFGISDLAAPVNGTDAARKIDIENALAGLNWQQDVDGMQVDAVLQPQKVEGKRYVLTAVANLHADFGTIDGVVDDVIVEYRDNAFEIVFTPTQDRAEGAIAWNSDTNQYVRFDGNAWANFGGMASVTAGLGLNLNGNELSVKVNAAGGVAVDSDGLNVKLDGASLSKGANGVRVANGGVGFAQLANNIVGSGLTRNTETSTIDLDITAVKSAGFIDADGGTIDHLIFSGEMQEVDGAAATRKFVVDSVATSAKTYVQDNTGGTGEGSTSYTFTHNAGQRFGTVVVLDSTGKQIIPDEITLVDANSLTVTLAQAMKVYIVFVAGANQFVVTP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 47542,35140 Da
isoelectric point:4,48843
aromaticity:0,06987
hydropathy:0,00873

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYD79888.1
1 458
Domain Start End Length (AA) Confidence
N-terminal 1 436 436 0,8827
Central domain 437 447 12 0,0078
C-terminal 448 458 10 0,9831
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-436
Central
437-447
C-terminal
448-458

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA11
[NCBI] 		2382310 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYD79888.1 [NCBI]
Genbank nucleotide accession
MH389777 [NCBI]
CDS location
range 52049 -> 53425
strand -
CDS
ATGAAACTAGGCAATATGACGTTGATGACTGGTGCGCAGATTTTAAACCTTCGTGGTGAAAAACGTGCATCCGACCCAACGCTCGGTTCGCTGGTTGCAAATCAGGAAGCATGGATCTGGTACAACACTACCGATAAGGTATACAAATATTTTGATGGCACTGCGATCAAAACGTTTGGCGAAGGTAGTTCTCCGGATCTGTCTGGCTACGTGAAAGCAGACGGCACCACGGCGATGACAGGCGTACTTGAATTAAGTTCTGCCGATCAATCCGCTGCGAATGATGTTGCGGCTGTAAGTAAAGGTTACGTTAGCGGTTTACTCGCTCGAAAACTTTCTGTTAGCGCAGAAGGTACTCTTGCGGCAAATCTTTCTGCTGGCGGTTTCGGTATCAGCGATCTTGCTGCGCCTGTTAATGGCACCGACGCTGCTCGTAAAATTGATATCGAAAATGCTCTCGCTGGTTTGAACTGGCAGCAAGACGTTGACGGTATGCAAGTTGATGCTGTTCTTCAACCGCAAAAAGTTGAAGGCAAACGTTATGTTCTGACTGCGGTTGCGAATCTGCACGCAGATTTCGGAACTATCGACGGCGTTGTTGATGACGTGATTGTTGAATATCGCGACAATGCTTTTGAAATTGTTTTCACTCCTACTCAGGATCGCGCGGAAGGCGCTATCGCGTGGAACTCCGATACCAATCAATACGTTCGTTTTGATGGTAATGCGTGGGCGAACTTCGGCGGTATGGCAAGCGTAACTGCTGGCCTCGGTTTAAATCTTAATGGCAACGAACTGTCGGTAAAAGTTAATGCTGCTGGCGGCGTTGCTGTTGATAGTGACGGCCTGAACGTTAAGCTGGATGGCGCAAGCCTTTCCAAAGGTGCAAACGGCGTTCGTGTTGCAAACGGCGGCGTAGGTTTTGCGCAACTGGCAAACAACATTGTTGGTTCCGGTTTAACGCGCAATACTGAAACGTCAACTATCGATCTGGATATTACCGCTGTTAAATCTGCTGGCTTCATTGATGCAGACGGCGGTACAATTGATCATCTGATCTTCTCCGGCGAAATGCAAGAAGTTGACGGCGCTGCTGCAACTCGTAAGTTTGTTGTTGATAGCGTTGCAACTAGCGCAAAAACTTACGTTCAGGATAACACAGGCGGCACTGGTGAAGGTTCAACTTCCTACACCTTCACGCACAATGCTGGTCAACGTTTCGGTACTGTTGTTGTTCTGGATTCAACGGGCAAACAAATCATTCCGGATGAGATCACTCTGGTTGATGCTAACAGCCTGACTGTAACTCTTGCACAAGCGATGAAAGTTTACATCGTGTTTGTTGCAGGCGCTAACCAGTTTGTTGTTACTCCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
66ac8e7331fe11e33dc7ffc64b5678be8d83087abf3e6764c6277cb0810b5975
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7341
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo bacteriophages are represented within an increasing diversity of environmental viruses infecting the emerging phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank