Protein

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Genbank accession
YP_011108620.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MECNEKLNIHQINKLDVNDLKRKDIFPITVTSAVFDKQGNSLEAILLQNNSIFLSYKGSSEATRITVPLKMRRKGLIISYKDYDGKAITEKLVYDDTVADDIFKLDSSWTRIGDVIISGEISISPNGTWIINGKDSGIKAVGPKGDNGLSPIVRTNNNKLEYSYNGTEWTVISDYIAAWFRFENNKIQISRDNIRWIDLSESFTQNLYIKGYVATISALPSNATQGDIYMVGPQTSGGTDYLMYIKDSTGWKDNGSFTSITAGVVQELGDSETKIISQKIVSENINNLLNIYSDCIKSIEASDSLLGGNSDFISNSIVDILSINTSELSLPIVDYDGNLGNSTQMLWATVQDGRYYHIVGDIETTVPMSIIVGWSSTPSDSTLITNYNSWKPSGKQHIDIIVKAEGVRMSLAKGLTITRITPNLVTTKVQTRSAISNLTTPTVAMSTANRRGPNYLIPKGSTISSFSFIPKQAGTSLMEVWKLEDGVLTVIDSLDITATNTSETQIESYIGKTLLYDTLFTFVDKEGTAGCIGMNNSSTTSSRMGQFSISVASGNQVNFTDVVSTFGALSMRIIYTIPINNDVKDVGNLGVLEVGAYKQFTTIQSAVNTARDGDTILIYPGIYNERVQAWGKNINLVGISRETCVLQDDSSDYRTPPLEMNVGSVQNMTIIETASNPDPAIDGVILPEGFPAKDMAYTIHAESSVNSYNRSLKIIGCRLINANRPCIGAGTYNNYSIEIIDTELYSGVGVYEEYKRGALYVHAKADGTGVSQSLKISKCDIYCEDNLAVTLRGYSNNSIKNFDIIVINCNIYSTINGKADSIINNNFGINSGMLLNDRSFGNNVAILNKL
Physico‐chemical
properties
protein length:850 AA
molecular weight: 93048,89030 Da
isoelectric point:5,02237
aromaticity:0,08000
hydropathy:-0,14800

Domains

Domains [InterPro]
DC_0777
STR
1–836
DC_0777
IPR012334
STR
591–714
IPR012334
IPR011050
STR
598–840
IPR011050
YP_011108620.1
1 850
Architecture
STR
STR 1-840 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011108620.1
1 850
Domain Start End Length (AA) Confidence
N-terminal 1 307 307 0,9818
Central domain 308 506 200 0,3484
C-terminal 507 850 343 0,2336
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-307
Central
308-506
C-terminal
507-850

Taxonomy

  Name Taxonomy ID Lineage
Phage Caudoviricetes sp. 'Rudgehvirus jaberico'
[NCBI] 		3028515 Uroviricota > Caudoviricetes > Crassvirales > Crudevirinae >
Host Bacteroides cellulosilyticus
[NCBI] 		246787 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011108620.1 [NCBI]
Genbank nucleotide accession
NC_091965 [NCBI]
CDS location
range 16667 -> 19219
strand +
CDS
ATGGAATGTAATGAAAAACTAAATATACATCAAATTAATAAACTTGATGTTAATGATTTAAAGAGGAAAGACATATTTCCTATTACAGTTACTTCTGCTGTTTTTGATAAACAAGGGAATAGTCTTGAAGCTATTTTACTTCAAAATAATAGTATTTTTCTTTCTTATAAAGGAAGTAGCGAAGCAACACGTATTACTGTTCCTTTAAAGATGAGAAGAAAAGGACTTATTATATCTTATAAAGATTATGATGGTAAAGCTATTACTGAAAAACTTGTTTATGATGATACTGTTGCAGATGATATATTCAAATTAGATTCATCATGGACAAGGATAGGTGATGTAATTATATCAGGAGAAATATCTATAAGTCCTAATGGAACATGGATTATAAATGGAAAAGATAGTGGTATAAAAGCAGTTGGTCCTAAAGGAGATAATGGTTTATCTCCTATTGTTCGAACTAATAATAACAAATTAGAATATAGTTATAATGGAACTGAATGGACTGTAATTAGTGATTATATAGCTGCTTGGTTTAGATTTGAAAATAATAAAATTCAAATAAGTAGAGATAATATTAGATGGATAGATTTAAGTGAATCATTTACTCAAAATCTTTATATTAAAGGTTATGTAGCTACAATTTCTGCTCTTCCTTCTAATGCTACTCAAGGAGATATTTATATGGTTGGTCCTCAAACATCTGGAGGAACTGATTATTTAATGTATATTAAAGATAGTACAGGTTGGAAGGATAATGGAAGTTTTACAAGTATTACTGCCGGAGTAGTTCAAGAATTAGGAGATAGTGAAACAAAAATAATTAGTCAGAAGATAGTTTCAGAAAATATAAATAATTTATTAAATATTTATTCAGATTGTATAAAAAGTATAGAAGCAAGCGATAGTTTATTAGGTGGAAATTCTGATTTTATTAGTAATAGTATAGTAGATATTTTATCTATTAATACTTCTGAATTATCATTACCGATAGTGGACTATGATGGTAATTTAGGTAATAGTACTCAAATGTTATGGGCTACAGTACAAGATGGAAGATATTATCATATTGTTGGTGATATTGAAACTACTGTTCCAATGAGTATCATTGTAGGATGGAGTTCTACTCCAAGTGATTCGACTTTAATTACCAATTATAATAGTTGGAAACCATCTGGAAAACAACATATAGATATTATAGTTAAAGCAGAAGGTGTAAGAATGTCTTTAGCTAAAGGTTTAACAATAACAAGAATCACTCCTAATTTAGTAACAACAAAAGTACAGACGAGAAGTGCTATTTCTAATTTAACAACTCCCACTGTAGCTATGTCTACAGCAAATAGAAGAGGACCAAATTATTTAATACCAAAAGGTAGTACTATAAGTTCTTTTTCATTTATTCCTAAACAAGCTGGTACATCTTTAATGGAAGTATGGAAATTAGAAGATGGTGTTCTTACTGTAATAGATTCTTTAGATATTACGGCTACTAATACTTCTGAAACACAAATTGAGAGTTATATTGGAAAAACTTTATTATATGATACTTTATTTACGTTTGTTGATAAAGAAGGAACTGCTGGTTGTATAGGTATGAATAATTCTTCAACGACTTCAAGTAGAATGGGACAATTTTCAATTTCTGTTGCATCTGGTAATCAAGTAAATTTTACAGATGTTGTTTCAACATTTGGAGCGTTATCTATGAGAATAATTTATACTATTCCTATAAATAATGATGTAAAAGATGTTGGAAATTTAGGAGTTTTAGAAGTAGGAGCATATAAACAGTTTACTACAATACAATCTGCTGTTAATACTGCAAGAGATGGGGATACTATTCTTATTTATCCAGGAATATATAATGAAAGAGTTCAAGCTTGGGGAAAAAATATAAATCTTGTTGGTATAAGTAGAGAAACTTGTGTTCTTCAAGATGATAGTTCTGATTATCGAACTCCTCCGCTTGAAATGAATGTGGGAAGTGTTCAAAATATGACAATAATCGAAACAGCAAGTAATCCTGATCCTGCTATTGATGGAGTAATATTGCCAGAAGGTTTTCCAGCTAAAGATATGGCTTATACAATACATGCTGAAAGTTCTGTTAATTCTTATAATAGATCATTAAAAATAATAGGTTGTAGATTAATTAATGCTAATCGTCCTTGTATTGGTGCTGGAACATATAATAATTATTCGATTGAAATTATTGATACTGAATTATATTCTGGAGTTGGAGTTTATGAAGAATATAAGAGAGGGGCATTATATGTTCATGCTAAAGCAGATGGAACCGGTGTTTCTCAATCTTTAAAAATAAGTAAATGTGATATTTATTGTGAAGATAATTTAGCTGTTACATTACGAGGATATTCTAATAATTCTATTAAAAACTTTGATATAATAGTTATTAATTGTAATATATATTCTACTATTAATGGAAAAGCCGATTCAATTATAAATAATAATTTTGGTATAAATAGCGGAATGTTATTAAATGATAGATCCTTTGGTAATAATGTTGCTATATTAAATAAATTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a88c8fbc0f05d1a38c19e23149cbd4ae029db026c1a5e969096a38935db7b652
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2840
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2 Papudeshi,B., Vega,A.A., Souza,C., Giles,S.K., Mallawaarachchi,V., Roach,M.J., An,M., Jacobson,N., McNair,K., Mora,M.F., Pastrana,K., Boling,L., Leigh,C., Cram,C., Plewa,W.S., Grigson,S.R., Bouras,G., Decewicz,P., Luque,A., Droit,L., Handley,S.A., Wang,D., Segall,A., Dinsdale,E.A. and Edwards,R.A. 2023 — GenBank