Protein

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Genbank accession
YP_008129884.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MASRYGGITGSKKISEDFQNINTAFENVQAEMDSNKTVVDNHIASSTAHKAEDITYQGDATGNNVKQAIDGMDSRIDNLIITGGDSSPEVADARGSYPVLGDRLNAFDADLSFNIDSINSRGINVKYPPAPLVGAKFDGITDDTTAIQNIINASPVNSLIFLPVGTCLISNLNVNKPVTIMGSGKTQTKLKVQSGSGIIFASGNNSYAVQGLGIEAVGAPKTDGTYGISGIGTDLSPNGIGYTKIEDVQITGFDHGIHLEYNQLAHISRTQCEANNVGIYTKRCVNMQYEAVIASLNLEYGFYIDGDAGFISFSCGSLLQGCTLVNNGANGGANFYIVYNEYFSIVNCMIDVPATGSTSNITTFNCTRGNIIGNWIGASYGIGINVLASNELTIIGNEIVACATMGMVLDSSGHNIIKGNSFTNNGDADVVLVGTSSRNLISGNMLMSTTSTNSIIDNRYSIITDNFCRKSILAHETSKVANNFENY
Physico‐chemical
properties
protein length:487 AA
molecular weight: 51623,02180 Da
isoelectric point:4,74079
aromaticity:0,07392
hydropathy:-0,05791

Domains

Domains [InterPro]
DC_1628
ATT
8–90
DC_1628 IPR012334
IPR011050
STR
134–366
IPR011050
IPR024535
ENZ
134–208
IPR024535 IPR007742
IPR011050
STR
359–467
IPR011050
YP_008129884.1
1 487
Architecture
ATT
STR
ATT 8-90 | STR 123-485 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008129884.1
1 487
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9848
Central domain 145 476 333 0,9970
C-terminal 477 487 10 0,1428
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-476
C-terminal
477-487

Taxonomy

  Name Taxonomy ID Lineage
Phage Paenibacillus phage PG1
[NCBI] 		754053 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Paenibacillus glucanolyticus
[NCBI] 		59843 Bacteria > Firmicutes > Bacilli > Bacillales > Paenibacillaceae > Paenibacillus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008129884.1 [NCBI]
Genbank nucleotide accession
NC_021558.1 [NCBI]
CDS location
range 11261 -> 12724
strand +
CDS
ATGGCGAGCCGGTACGGGGGAATAACGGGAAGTAAAAAAATCAGTGAGGATTTCCAAAACATCAATACAGCTTTTGAAAATGTGCAAGCAGAAATGGACTCAAACAAAACCGTTGTTGATAATCATATAGCTTCCTCAACAGCACATAAAGCCGAGGATATTACGTACCAAGGCGACGCAACCGGAAACAATGTTAAACAGGCTATTGATGGCATGGATTCACGTATTGATAATCTAATTATTACTGGTGGAGACAGCAGTCCAGAAGTTGCTGATGCGCGGGGAAGTTACCCGGTCTTGGGTGACAGACTTAACGCATTTGATGCAGATTTGTCTTTCAACATAGATAGCATCAACAGCAGGGGGATTAACGTGAAGTATCCACCAGCACCATTAGTTGGTGCAAAGTTTGACGGGATCACGGACGATACTACAGCCATTCAGAACATCATTAATGCATCACCTGTCAACAGCCTAATCTTTTTACCTGTTGGTACTTGCTTGATAAGCAACCTAAATGTAAACAAACCGGTAACCATCATGGGTAGTGGAAAGACGCAAACTAAACTCAAGGTACAATCGGGGAGTGGCATTATTTTTGCTTCTGGTAATAATAGTTATGCTGTTCAAGGCTTAGGGATTGAAGCGGTTGGAGCACCTAAAACTGATGGCACCTATGGTATCAGCGGTATTGGAACAGACTTAAGTCCAAATGGAATAGGGTACACGAAGATAGAAGATGTGCAGATAACTGGTTTCGATCATGGTATACACTTGGAATATAATCAGTTGGCTCATATATCTAGAACTCAGTGCGAAGCAAACAATGTGGGCATATACACAAAACGTTGCGTCAACATGCAATACGAAGCGGTGATTGCATCGTTGAATTTGGAATATGGTTTTTATATTGATGGTGATGCTGGGTTTATTTCATTCAGTTGTGGGTCTCTCTTACAAGGATGCACACTTGTGAACAACGGGGCAAACGGAGGGGCTAATTTTTACATCGTGTACAACGAGTATTTCTCGATTGTAAATTGCATGATAGACGTGCCGGCTACTGGGAGCACTAGCAATATTACGACATTTAATTGTACTAGGGGTAATATCATAGGCAATTGGATCGGAGCCTCATATGGTATTGGTATTAATGTTCTTGCTTCAAATGAACTTACGATAATAGGAAATGAAATCGTAGCATGTGCAACAATGGGGATGGTGCTAGACTCATCTGGTCATAACATCATTAAAGGTAATTCTTTCACTAATAACGGTGACGCTGATGTAGTTTTAGTAGGAACATCGTCTCGAAATTTAATATCAGGCAACATGCTAATGAGTACAACAAGCACAAACTCTATTATAGACAATCGCTACAGCATTATTACGGATAATTTTTGCAGAAAGTCAATATTGGCACACGAAACATCAAAAGTAGCAAATAATTTCGAAAATTATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b9bf143833e605ad06af0d6ab0b01cb7ae64ef457cb42a3900ef79d861ff4ebb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8873
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Paenibacillus phage PG1 Henn,M.R., Engelen,B., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank