Protein

View in Explore
Genbank accession
UJD04640.1 [GenBank]
Protein name
tail spike protein with colonic acid degradation activity
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MTGCHAVTTKYQSVAVGKGSPIIESNVFDISKSARALNSVTSFQVGILDFNKNIIRADSNLLSSSGHIRVTNSRMNNVNGNKIYNASSVRFSVSLQLGNFNENLVDGPVTLYFSGPVRCNKNLLRDGATYTTPDITYYRASDGVFEDNDVYVYNAADAQAQLVLLNATTNFKGLNNRVHVTAATGTRAASIPVFKTFGQCLYTDISENSVSGDSASAYPWNLFNGVSGAFVFTCKNNRTDNATATLLTGLYSQRAPWRLEGNDWTQTFTAEINTEANLYSAYKAVLGEKIPYIRPVAGGAEGIVKTSSGWKTYGSVAA
Physico‐chemical
properties
protein length:318 AA
molecular weight: 34355,90170 Da
isoelectric point:8,76546
aromaticity:0,10377
hydropathy:-0,18270

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UJD04640.1
1 318
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0083
Central domain 11 265 256 0,9914
C-terminal 266 318 52 0,9842
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-265
C-terminal
266-318

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage PWKp2
[NCBI] 		2863270 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UJD04640.1 [NCBI]
Genbank nucleotide accession
MZ634339.1 [NCBI]
CDS location
range 27 -> 983
strand +
CDS
ATGACCGGATGTCACGCCGTTACTACTAAGTACCAGTCCGTTGCAGTGGGTAAGGGTAGCCCTATTATAGAGAGTAACGTATTCGATATCTCTAAGAGTGCTCGCGCCCTAAACTCTGTAACCTCATTCCAAGTTGGTATTCTTGATTTCAATAAGAATATCATACGAGCTGATTCTAACCTGTTGTCGTCCAGCGGGCATATACGAGTCACTAACTCGCGTATGAACAATGTCAACGGGAATAAAATCTACAACGCTTCTAGCGTACGTTTCAGCGTATCCTTGCAACTTGGTAACTTCAATGAGAACCTGGTGGATGGACCTGTGACCCTGTACTTCTCAGGCCCTGTGCGTTGCAATAAGAATTTACTGCGTGATGGTGCTACATACACTACCCCGGATATAACCTATTACCGGGCCAGTGACGGCGTGTTCGAGGATAATGATGTTTATGTATATAATGCTGCTGATGCACAGGCACAGCTAGTGTTACTCAACGCTACGACTAACTTCAAGGGCCTGAATAACCGTGTGCACGTAACGGCGGCTACAGGTACTCGGGCTGCGTCTATTCCTGTGTTCAAGACCTTTGGGCAGTGTCTGTACACGGATATCAGTGAGAACTCGGTATCCGGAGATAGTGCCAGTGCATATCCTTGGAACCTGTTCAACGGTGTATCTGGAGCTTTCGTGTTTACCTGCAAGAACAACCGCACGGACAATGCTACGGCGACTCTACTCACCGGGCTGTACTCTCAGCGCGCGCCTTGGAGGTTGGAGGGTAATGACTGGACTCAAACCTTTACGGCCGAGATTAACACCGAAGCTAACCTGTATTCTGCGTACAAGGCTGTGCTGGGCGAGAAGATACCGTATATCCGCCCTGTAGCAGGAGGTGCTGAGGGTATCGTTAAAACTAGTAGCGGCTGGAAAACTTATGGCTCTGTAGCCGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b1c08d33705902a5ef59e7c2342913cd99d79d095efbab70ab7eab56506ed286
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7070
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lytic Bacteriophages against Mutidrug-Resistant Klebsiella pneumoniae: Development of an Effective Phage-based Approach to Combat Multidrug Resistance Martins,W.M.B.S., Cino,J., Li,M., Lenzi,M.H., Sands,K., Portal,E., Mathias,J., Hansan,B., Dantas,P., Migliavacca,R., Hunter,J.R., Medeiros,E.A., Gales,A.C. and Toleman,M.A. 2021 — GenBank