Protein

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Genbank accession
AKC02272.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 0,62
Protein sequence
MAFNYTPLTETQKLKDMYPKVNDIGNFLKTEVNLSDVKQISQPDFNNILASIPDSGNYYVTNSKGAPSGEATAGFVRLDKRNVNYYKIYYSPYSSNKMYIKTYANGTVYDWISFKLDEGSLYNEGNTLNVKELTESTTQYATLVNPPKENLNTGWVNYKESKNGVSSLVEFNPVNSTSTFKMIRKLPVQEQKPNLLKDSLFVYPETSYSNIKTDNWDTPPFWGYSSNSGRSGVRFRGENTVQIDDGSDTYPSVVSNRFKMGKELSVGDTVTVSVYAKINDPALLKDNLVYFELAGYDTVDDTSKNPYTGGRREITASEITTEWKKYSFTFTIPENTIGASGVKVNYVSLLLRMNCSSSKGNGAVVYYALPKLEKSSKVTPFITHENDVRKYDEIWSNWQEFISKDELKGHSPVDIEYNDYFKYQWWKSEVNEKSLKDLAMTVPQGYHTFYCQGSIAGTPKGRSIRGTIQVDYDKGGPYRANKFVKLLFTDTEGIPYTLYYGGYNQGWKPLKQSETSTLLWKGTLDFGSTEAVNLNDSLDNYDLIEVTYWTRSAGHFSTKRLDIKNTSNLLYIRDFNISNDSKGSSVDFFEGYCTFPTRTSVQPGMVKSITLDGSTNTTKVASWNEKERIQVYNIMGINRG
Physico‐chemical
properties
protein length:640 AA
molecular weight: 72549,11650 Da
isoelectric point:6,92966
aromaticity:0,12969
hydropathy:-0,61000

Domains

Domains [InterPro]
DC_0568
STR
5–406
DC_0568
cd19958
STR
44–111
cd19958 G3DSA:2.60.120.260 DC_0448
IPR003305
CBM
228–337
IPR003305
AKC02272.1
1 640
Architecture
STR
STR 5-639 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AKC02272.1
1 640
Domain Start End Length (AA) Confidence
N-terminal 1 293 293 0,6089
Central domain 294 505 213 0,2101
C-terminal 506 640 134 0,9725
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-293
Central
294-505
C-terminal
506-640

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage IME-SA1
[NCBI] 		1610830 Uroviricota > Caudoviricetes > Herelleviridae > Kayvirus > Kayvirus G1
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AKC02272.1 [NCBI]
Genbank nucleotide accession
KP687431 [NCBI]
CDS location
range 56382 -> 58304
strand +
CDS
ATGGCATTTAACTACACGCCTCTTACTGAAACACAGAAGTTAAAAGATATGTATCCTAAAGTTAATGATATAGGTAACTTTTTAAAAACAGAAGTTAACCTTAGTGATGTAAAACAGATATCACAACCCGACTTTAATAATATTTTAGCATCTATACCTGATAGTGGTAACTATTATGTAACTAATTCAAAAGGTGCTCCTAGTGGAGAAGCTACAGCAGGATTTGTAAGATTGGATAAAAGAAATGTAAATTATTATAAAATTTACTATTCACCATATAGCAGTAACAAAATGTATATCAAGACTTATGCTAATGGTACTGTATATGATTGGATTAGTTTTAAATTAGATGAAGGTAGCTTATACAATGAAGGTAATACTTTGAATGTAAAGGAACTTACTGAATCCACAACTCAATATGCAACACTAGTTAATCCTCCAAAAGAGAACTTAAATACAGGTTGGGTTAATTACAAAGAAAGTAAAAATGGTGTTTCTTCTTTAGTAGAATTTAACCCGGTTAACTCCACTTCAACTTTTAAGATGATAAGAAAGTTACCAGTACAAGAACAAAAGCCTAACTTATTGAAAGATAGTTTATTTGTTTATCCTGAAACTAGCTATTCTAATATTAAAACAGATAACTGGGATACGCCTCCATTTTGGGGATATTCTTCTAATAGTGGTCGTTCAGGAGTTAGATTTAGAGGAGAGAATACAGTACAGATAGATGATGGGTCTGATACGTACCCTTCAGTAGTTTCTAATAGGTTTAAAATGGGTAAAGAACTTTCTGTAGGTGATACTGTAACGGTATCAGTATATGCTAAAATTAATGACCCTGCTTTACTTAAAGATAACTTAGTTTACTTTGAATTAGCAGGATACGATACTGTAGATGATACTAGTAAAAATCCTTATACAGGAGGACGTAGAGAAATAACAGCAAGTGAGATAACAACTGAGTGGAAAAAATACTCTTTCACATTCACTATACCTGAAAATACAATCGGAGCATCAGGCGTTAAAGTTAATTACGTATCTTTACTACTAAGAATGAATTGTTCATCTAGTAAAGGTAATGGTGCTGTAGTATACTATGCCTTACCTAAATTAGAAAAATCATCTAAAGTTACACCATTTATTACACATGAAAATGATGTTCGTAAATATGATGAGATTTGGTCTAATTGGCAAGAATTTATTAGTAAAGATGAATTAAAAGGTCACTCCCCTGTAGATATTGAATATAATGATTATTTTAAATATCAGTGGTGGAAATCTGAAGTTAATGAAAAGAGTTTAAAAGATTTAGCTATGACAGTACCTCAAGGATATCATACATTTTATTGTCAAGGCTCTATTGCCGGGACGCCTAAGGGACGTTCTATTAGAGGAACCATTCAGGTAGATTATGACAAAGGTGGCCCATATAGAGCTAATAAGTTTGTTAAATTATTGTTTACTGACACAGAGGGTATTCCTTACACATTATATTATGGTGGTTATAACCAGGGTTGGAAACCCTTAAAGCAATCAGAAACTTCTACTTTACTATGGAAAGGTACTTTAGATTTTGGGTCTACGGAAGCTGTTAACTTAAATGACTCATTAGATAATTACGATTTAATTGAGGTAACTTATTGGACTCGTTCAGCAGGACATTTTTCTACAAAAAGATTAGATATAAAAAATACATCAAATTTACTGTATATTAGAGATTTTAATATTTCAAATGATAGTAAAGGTTCTAGTGTAGACTTTTTTGAAGGGTATTGCACTTTTCCTACTAGAACATCAGTACAACCTGGTATGGTAAAATCTATAACTTTAGACGGGTCTACAAATACAACAAAAGTAGCATCATGGAATGAAAAGGAACGTATACAGGTATACAATATTATGGGAATTAATAGAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4f37bc254c1ac1372d076cc1579278d138d1533b4ded4e3fb2238c7ac0dd1e96
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7048
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Twort-like Staphylococcus aureus bacteriophage genome termini and adjacent variable region: novel finding identified using high-occurrence read termini (HORT) theory via only HTS data Zhang,X., Kang,H. and Tong,Y. 2015-05-28 — GenBank