Protein

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Genbank accession
QAX92068.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,82
Protein sequence
MLSSLMIMSPDGISRPGIYVRKEHSERLHAGALLFYLFANYPETNNRFRANQFLCQKRMMGYNHAKSASWIQFNASTAGSVASSPENYQSLIAGSCDTRGLGYVGALAFVMMTTGNNEWPRAQISAGTQDRDGSGNIGLQMHFRFMASGQISYAGPQGLRSFQQVPASDRGIKHSIKDDESSIAYNNIKSILFRNFIFNDDESLVIRTYVIAQEIAPSFNLYVKRRYSESHPINGPKDVFERLELDTTPDLLDTMRALQCTINHERMKVEEFVESLKSRLISEGC
Physico‐chemical
properties
protein length:285 AA
molecular weight: 32050,92220 Da
isoelectric point:7,70961
aromaticity:0,09825
hydropathy:-0,35368

Domains

Domains [InterPro]
DC_1541
STR
3–204
DC_1541
IPR030392
CHP
168–280
IPR030392
DC_0247
RBD
174–282
DC_0247
QAX92068.1
1 285
Architecture
STR
RBD
STR 3-204 | RBD 205-282 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage vB_SsoS_008
[NCBI] 		2507846 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sonnei
[NCBI] 		624 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QAX92068.1 [NCBI]
Genbank nucleotide accession
MK335533 [NCBI]
CDS location
range 36312 -> 37169
strand -
CDS
ATGTTGTCATCATTGATGATTATGTCACCTGATGGAATATCTCGACCAGGGATTTACGTCAGAAAAGAACATAGCGAGCGCTTGCATGCTGGGGCTTTATTATTTTACTTGTTTGCAAACTACCCCGAGACTAACAATAGATTTAGAGCTAATCAGTTTTTATGCCAGAAAAGGATGATGGGTTACAACCATGCAAAGTCTGCTTCATGGATACAGTTTAATGCAAGTACTGCTGGTAGTGTTGCTAGCAGCCCTGAAAACTATCAATCACTTATTGCTGGATCGTGTGATACAAGGGGTCTGGGGTATGTTGGCGCTTTAGCTTTTGTTATGATGACTACGGGCAATAATGAATGGCCCAGGGCACAAATATCAGCGGGCACTCAAGATAGGGATGGATCAGGCAATATTGGTCTGCAAATGCATTTCAGGTTTATGGCTTCAGGGCAAATATCTTACGCTGGACCGCAAGGGTTGAGAAGTTTCCAACAGGTTCCGGCATCTGACAGGGGTATAAAGCACAGCATAAAGGATGATGAATCAAGCATTGCATACAACAACATAAAATCAATATTGTTTAGGAACTTTATCTTTAACGATGATGAGTCTTTGGTTATAAGGACTTATGTCATAGCTCAGGAGATAGCGCCTTCATTCAATCTATATGTTAAGAGAAGGTATAGCGAGAGCCATCCTATAAACGGGCCAAAAGATGTTTTTGAAAGGCTTGAGCTTGATACAACTCCTGACTTGCTTGACACTATGAGAGCTTTACAGTGCACAATAAATCATGAAAGAATGAAAGTTGAAGAGTTTGTTGAAAGCTTAAAAAGTAGACTCATTTCCGAAGGCTGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7b90ec679081547b07bb59cb0bc15520b3ecb5ccb5c0f4568376e1d6ed33da8d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5648
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of novel bacteriophages infecting Shigella spp. and E. coli O157: H7 Shahin,K., Barazandeh,M., Bao,H. and Wang,R. 2020-06-17 — GenBank