Protein

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Genbank accession
QQO38425.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
Protein sequence
MGFGPAYGTGRGGGAVDIFTKKDGNPAIFANTGARDTYFTSNPDELAKVKSSGDAVAIGTANQITAAYVYKQNAWQPIATNFKGDKGAPGTPGDGIDYSHLTQGQIPKWDATAKRFTNSGVTSKEDGSITLEPASLHLGSHSISSSAENVTFTNVVTNKVYAPLWQEVGYGTKTGYIRSHGPKLEVELETDNSKDLINPFFNYTAPADASLFGARIEVAQDATNVEVHVLLNNEELWLVRLGDLSAGEQDIFFPNPADFKAGNTYDVRVASSDGSDVILKGSQYDTPKATLHVAKWTDEIVASQEWLKTLKLVNDITLSGDQFSFTMLDGTSKTVTLPVGGSAKAAPYNFIELLTDRGISVSELTNSTPIFSFEEDTSITLTMPATSTLPVGRDSAFIVENRTTTPAAVVEVKASNTDIVNRPGLTSFNVPTNHTILFVSNVASNSWHAIVLASGGTGGSSLNEGQVVKALETTSSGKDLLVRYYDDTSSTLTFNPWVDDIAKLNKAVSDLERHLKNKTKFYVYKGDTIPTDVPRGSRGGYYFTFYGTTSELTLTTPVTASKISDGTILFIDNNSPDYSVTVNTPQGETIAGQASVSIAPEAAAWYVRNDNNWQELYSGFLPRSHKDLINEMKALVSADNNFIRNLNVQSDDPTQTAVAATSLEFKGFDVTTPADDTTKGIIKFKGATFENPDGSKVVTDVLKLVGMEVVDPGDGTPPKLMLTGGALPLPHPTSAYAFFDAAATVPDTVDFTSLTKFTNGKVTVTKSTADPQYVYILIPAAEGAGADRIGEQGGLPAFWDKSSKTYTINGQSETFTVFRSPYPLKEQDVTLIIYH
Physico‐chemical
properties
protein length:835 AA
molecular weight: 89706,74100 Da
isoelectric point:4,89522
aromaticity:0,09341
hydropathy:-0,25425

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQO38425.1
1 835
Domain Start End Length (AA) Confidence
N-terminal 1 734 734 0,8925
Central domain 735 824 91 0,2711
C-terminal 825 835 10 0,9829
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-734
Central
735-824
C-terminal
825-835

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPG01
[NCBI] 		2798882 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQO38425.1 [NCBI]
Genbank nucleotide accession
MW398869.1 [NCBI]
CDS location
range 34764 -> 37271
strand -
CDS
ATGGGATTTGGCCCAGCCTATGGTACTGGTAGGGGCGGTGGTGCAGTTGACATTTTCACAAAGAAAGATGGAAACCCTGCCATATTCGCCAATACTGGTGCTAGAGACACATATTTTACATCAAATCCAGATGAATTAGCTAAAGTTAAATCTTCTGGTGATGCAGTTGCTATTGGTACAGCTAACCAGATTACAGCAGCTTACGTATATAAACAAAACGCGTGGCAACCTATTGCTACTAACTTCAAAGGAGATAAAGGTGCTCCAGGTACTCCTGGCGATGGTATTGATTACAGCCATCTTACTCAAGGACAAATTCCTAAATGGGACGCGACTGCTAAGAGATTTACTAATTCAGGTGTTACTTCGAAAGAAGATGGCTCGATTACCCTAGAGCCTGCATCATTACATCTAGGCTCACATTCTATTTCAAGTAGCGCGGAAAACGTAACCTTTACTAACGTAGTTACAAATAAAGTGTACGCTCCTTTATGGCAAGAAGTAGGCTACGGAACTAAAACAGGGTATATTAGGTCCCATGGCCCAAAACTAGAAGTAGAGCTAGAAACAGATAACAGTAAAGATTTAATAAACCCTTTCTTCAACTATACAGCACCTGCCGATGCCTCTCTATTCGGTGCTAGAATAGAAGTAGCTCAAGATGCTACCAACGTAGAAGTGCATGTATTATTAAATAATGAAGAGTTATGGTTAGTTAGGTTAGGGGATTTATCTGCTGGAGAACAGGATATTTTCTTCCCAAACCCAGCAGACTTTAAAGCAGGTAATACCTATGATGTTAGGGTGGCTAGCTCTGATGGGTCTGATGTTATACTTAAAGGTAGTCAGTATGACACCCCAAAAGCTACGTTACATGTAGCTAAATGGACAGACGAGATAGTAGCTTCTCAAGAATGGTTAAAAACCCTAAAATTAGTAAATGACATTACATTAAGTGGTGATCAGTTCAGTTTTACAATGCTGGATGGTACTAGTAAGACTGTTACACTACCTGTTGGAGGTTCGGCTAAAGCGGCACCGTACAACTTTATAGAGTTGTTAACAGATAGGGGCATCTCAGTATCCGAACTGACTAACTCTACTCCTATTTTTAGTTTTGAAGAAGATACTTCTATTACTCTTACAATGCCTGCTACAAGTACTCTTCCGGTAGGTCGAGATAGTGCATTTATAGTAGAAAATAGGACTACTACACCCGCAGCAGTAGTAGAAGTAAAAGCAAGTAACACAGATATAGTTAATAGGCCTGGACTTACTTCTTTCAATGTGCCTACCAACCATACCATACTATTTGTAAGCAACGTAGCAAGCAACTCCTGGCATGCAATAGTGCTGGCCTCTGGTGGCACCGGTGGTTCTAGTTTGAACGAGGGGCAAGTAGTAAAAGCTCTAGAAACTACATCTAGTGGTAAAGACTTACTTGTACGCTACTACGACGATACCAGTTCTACCCTTACGTTCAACCCATGGGTAGACGATATTGCCAAACTAAATAAAGCTGTATCTGACTTAGAAAGACACCTAAAAAACAAAACTAAGTTTTATGTATATAAAGGTGATACTATACCTACCGATGTGCCTAGAGGTTCTCGCGGAGGTTACTACTTTACTTTCTATGGTACAACTTCTGAGCTAACTCTCACAACCCCTGTAACAGCTAGTAAGATTAGTGATGGTACTATATTATTCATAGATAATAATTCGCCCGATTATTCTGTAACAGTAAACACACCGCAAGGAGAGACAATAGCAGGGCAGGCCTCTGTATCTATAGCTCCTGAAGCCGCCGCATGGTATGTTAGAAATGACAATAACTGGCAGGAATTATACTCTGGATTTTTACCGCGCTCCCACAAAGATCTTATTAACGAGATGAAGGCTTTAGTGAGTGCGGATAATAACTTTATTCGTAACTTAAATGTACAAAGTGACGATCCTACCCAAACTGCTGTAGCTGCTACTTCATTGGAATTCAAAGGGTTTGATGTTACCACTCCTGCTGATGATACTACAAAAGGTATTATAAAGTTCAAAGGGGCTACATTCGAGAACCCTGATGGTAGTAAAGTAGTTACAGATGTATTGAAACTTGTTGGTATGGAAGTTGTTGATCCAGGCGACGGTACACCGCCAAAACTAATGTTAACTGGTGGAGCGTTACCTTTACCACACCCAACTAGCGCATATGCATTCTTTGATGCAGCTGCTACAGTACCAGATACAGTAGACTTCACTTCATTAACTAAGTTTACTAACGGTAAGGTTACAGTTACTAAATCTACTGCTGACCCTCAATATGTGTATATTCTTATTCCTGCTGCTGAAGGGGCAGGGGCTGACCGTATTGGAGAGCAAGGTGGACTACCTGCATTCTGGGATAAAAGCTCTAAAACTTATACCATCAATGGACAGAGTGAAACATTCACAGTGTTCCGTTCTCCTTACCCACTAAAAGAGCAGGACGTTACACTAATAATTTACCATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f06171889be1d8ecd5b410720a2a5842f4d812dd82f1ab36747e4d043b3d33a6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3179
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio parahaemolyticus Bacteriophage VPG01 Kim,B.S. and Kim,M. 2012-06-15 — GenBank