Protein

View in Explore
Genbank accession
YP_009790376.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTNIKARKGGSSKPRTPVEMPDNLISKDKIKLLLAVSDGEVVDDFSLKQLHFGGVPVQNDDGTYNYEGVIAEFRPGTQTQDYIQGFSESSAEFQVARDVTHNTPYTLTVSNKNLSAIRFRLLWPRVLTQKDNGDMVGSVVEYKIEMAVDGASYQTYLTGKIDGKNTTGGYDRSIRVNLPQDFTSQVLIRVSRITPDADGVKVVDAFQVQSYAEVIDAKFRYPLTAMLYVEFDSDLFQNQIPTISLKKKWKIVQVPSNYDPVNRTYAGTWDGTFKWAWSNNPAWVLYDLIMNQRYGLDQRELGIPVDKWSLYEVSQYCDELVPDNRGGMEPRYLMDMVVQSQVEAFQLVRDVCSAFRGMTFYNGESLSIIVDKPRDPVYLFTADNVVDGVFVRTFPSEKTMYTSCNVMFDDEENQYEQDVEPVFNPDAAMRFGHNPTSITAIGCTRRTEANRRGRWILQTNLSATTVSFSTGLEGMIPSCGDVIYVADPHWQSAFNLVLSGRIMEVTGTQVFLAFRCDAKAGDTLILNTDDGKPLRRTIASVSADGKTLTLNVGYNFDVAPDSVFLIESDQLAAEQYVVTRIEKGSDDDEFTFAITATQYNPNKYDAIDNGVITDDRPTSVVDPDSMGAPENVSISSFSRIVQGMSVETMVIGWSAVQYAKLYEVQWRKDGGNWNNVPRTATTQVDIEGIYAGEYQARVRCISGGNIASPWSALASASLTGKVGAPKGPINLFASDDEIFGIRVKWAMPEGAEDTAYIELYQSQSGTDQDASLLTLIPYPASEYWHSILPAGYVNFYKARSVDRIGNVSAWTDYARGMSSTDVNAITDVILDEILDSDAMKELRESAQDSAAKLNEYANSIIQNALANDGDVRIMRKENGKRKAEIKRAEVLIANETEARVQQVNQISAEFNENLNAGLTQVNEALANETEARVTSEEALSARIGQNSAALDQKLDSWADVNGVGSMYTMKLGLTYNGQEYNSGMALQLAAQGDNVVSQVLFIADRFAIIRNAESGAYTLPFVMQNDQVFMNNALIQDGSITNAKIGNFIQSNNYIAGQQGWMINKNGGSEFSEVTVRGTIYATDGWFKGTVYAEHIEGDVMIAESNTIPFKTYSDIDSGDYEILKIHGENFDRSIDTNLIIQVNSTFRNTFRVIVQTPGKGEKEFYSIDTGNDGGTRAYALRGFDLPAAGRGQENRIIVRVTQSGRGSNIKTFTPWVERDNGNTGQETSDGVIYNTGFIRERAYISAYRKGNRIVV
Physico‐chemical
properties
protein length:1256 AA
molecular weight: 139383,07510 Da
isoelectric point:4,75256
aromaticity:0,09713
hydropathy:-0,34283

Domains

Domains [InterPro]
DC_0014
STR
1–1249
DC_0014
IPR053171
Unmapped
3–872
IPR053171 Coil IPR015406
IPR055385
ATT
90–217
IPR055385 IPR032876 IPR036116 Coil
IPR013783
STR
627–720
IPR013783
YP_009790376.1
1 1256
Architecture
STR
ATT
STR
ATT
STR
STR 1-89 | ATT 90-217 | STR 218-340 | ATT 341-489 | STR 490-1249 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009790376.1
1 1256
Domain Start End Length (AA) Confidence
N-terminal 1 500 500 0,8633
Central domain 501 1051 552 0,0647
C-terminal 1052 1256 204 0,5620
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-500
Central
501-1051
C-terminal
1052-1256

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage KOX1
[NCBI] 		1970798 Uroviricota > Caudoviricetes > Drexlerviridae > Webervirus KOX1 >
Host Klebsiella oxytoca
[NCBI] 		571 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009790376.1 [NCBI]
Genbank nucleotide accession
NC_047825.1 [NCBI]
CDS location
range 16150 -> 19920
strand +
CDS
ATGACTAATATCAAGGCCCGCAAGGGCGGTTCCAGCAAGCCGCGAACCCCGGTAGAAATGCCTGATAACCTGATCTCGAAAGACAAGATCAAGTTATTGCTGGCCGTTTCTGACGGTGAAGTAGTGGATGACTTCAGCCTGAAGCAGTTGCATTTCGGCGGTGTCCCGGTTCAGAACGACGATGGAACTTACAACTATGAAGGCGTAATCGCTGAGTTTCGCCCCGGCACGCAAACGCAGGACTACATCCAGGGCTTCAGCGAATCAAGCGCTGAATTCCAGGTTGCTCGCGACGTTACTCATAATACGCCGTACACGCTTACCGTATCGAACAAAAATCTGTCTGCTATTCGCTTTCGCCTGTTATGGCCGCGCGTGCTGACTCAAAAAGATAACGGCGATATGGTCGGATCGGTTGTTGAGTACAAGATCGAGATGGCGGTAGATGGTGCAAGTTATCAGACCTACCTAACTGGCAAGATTGACGGCAAGAACACGACTGGCGGTTACGATCGCAGCATCCGCGTCAACTTGCCGCAAGACTTCACGTCGCAGGTTCTTATCCGCGTAAGCCGAATTACGCCGGACGCTGACGGGGTGAAGGTGGTCGATGCCTTCCAGGTTCAGTCCTACGCTGAGGTGATCGATGCAAAATTTCGCTATCCGCTGACGGCAATGCTTTACGTCGAGTTTGATAGCGATCTGTTCCAGAACCAGATCCCGACAATCTCGCTCAAGAAGAAGTGGAAGATTGTCCAGGTTCCGAGTAACTACGACCCTGTTAACAGGACGTATGCCGGAACGTGGGACGGAACTTTCAAATGGGCGTGGAGCAACAACCCGGCCTGGGTTCTTTACGACCTGATCATGAATCAGCGTTATGGGTTAGACCAGCGCGAGTTGGGGATCCCGGTCGACAAGTGGTCGCTCTATGAGGTGTCGCAATACTGTGATGAGCTTGTGCCGGACAATCGCGGCGGGATGGAACCGCGTTACCTGATGGATATGGTCGTGCAGTCGCAGGTCGAAGCCTTCCAGTTGGTCAGGGATGTTTGTTCCGCCTTCCGTGGAATGACGTTCTACAACGGGGAAAGCCTTTCGATTATCGTAGATAAGCCACGCGATCCGGTTTATCTGTTCACTGCTGATAACGTCGTTGACGGCGTATTCGTGCGAACATTTCCGAGCGAAAAAACGATGTACACATCGTGCAACGTGATGTTCGACGACGAAGAAAACCAGTACGAGCAGGACGTTGAACCAGTGTTTAACCCTGACGCTGCCATGCGGTTCGGTCACAACCCGACAAGCATCACAGCGATCGGTTGCACCAGACGGACAGAAGCTAACCGCCGCGGGCGCTGGATTCTGCAAACGAACCTAAGCGCAACCACCGTTTCGTTTTCTACTGGCCTGGAAGGTATGATCCCTTCGTGCGGCGATGTGATTTACGTTGCAGATCCGCATTGGCAATCGGCCTTTAACCTGGTGCTTTCGGGGCGAATCATGGAAGTAACGGGAACGCAGGTTTTTCTGGCTTTCCGCTGCGACGCGAAGGCTGGCGACACTCTGATCCTGAACACTGACGACGGCAAGCCATTACGTCGAACCATTGCCAGCGTATCAGCAGACGGAAAAACCCTGACGCTAAATGTGGGATATAACTTCGACGTTGCGCCGGACAGCGTATTCCTGATCGAAAGTGACCAACTGGCGGCTGAACAGTACGTTGTTACCAGGATTGAGAAGGGGAGCGATGACGACGAATTTACCTTCGCCATCACTGCCACCCAATACAACCCGAACAAGTACGACGCGATCGACAACGGCGTAATCACTGACGACCGCCCAACGTCGGTTGTTGACCCTGATTCAATGGGGGCGCCGGAAAACGTGTCGATTAGTTCATTCTCACGCATTGTGCAGGGTATGAGCGTCGAGACGATGGTAATCGGATGGTCTGCCGTGCAGTACGCAAAACTTTACGAGGTGCAATGGCGTAAGGATGGCGGAAACTGGAACAACGTGCCGCGCACAGCGACAACGCAGGTTGACATTGAAGGGATTTATGCTGGCGAATACCAAGCGCGCGTAAGGTGCATTAGCGGAGGAAATATCGCGTCTCCGTGGTCTGCTTTGGCTAGTGCATCGCTGACCGGGAAAGTCGGAGCGCCAAAAGGCCCGATTAACCTGTTTGCGTCGGACGATGAGATCTTTGGCATTCGCGTTAAGTGGGCCATGCCTGAAGGTGCGGAAGACACGGCATACATTGAACTTTACCAGTCGCAAAGCGGAACCGATCAGGATGCAAGCCTGCTTACTCTGATTCCTTACCCGGCCTCTGAATACTGGCATTCAATTTTGCCCGCTGGCTACGTGAACTTCTACAAAGCCAGAAGTGTAGACCGTATCGGCAACGTTTCAGCATGGACTGATTACGCTCGCGGCATGTCGTCTACTGACGTTAACGCCATCACGGATGTGATCCTGGATGAGATCCTCGACAGCGACGCGATGAAAGAACTTCGTGAGAGTGCGCAGGATAGCGCGGCAAAACTCAATGAATACGCGAACAGTATCATTCAAAACGCATTAGCGAATGATGGCGATGTTAGAATAATGAGAAAGGAGAATGGCAAGAGGAAAGCTGAAATTAAACGCGCAGAAGTTCTCATAGCAAATGAGACGGAAGCCAGGGTGCAGCAGGTTAACCAGATCTCGGCAGAGTTCAACGAAAACCTCAATGCTGGATTAACTCAAGTTAACGAGGCACTAGCCAATGAAACTGAGGCACGCGTTACTTCCGAGGAGGCTCTATCAGCAAGGATTGGCCAGAACTCCGCAGCGCTAGATCAGAAACTCGACTCATGGGCTGACGTTAATGGAGTTGGCTCCATGTATACAATGAAGCTAGGACTGACGTACAACGGGCAGGAATACAATTCCGGGATGGCTCTACAACTTGCCGCGCAAGGTGACAACGTTGTTTCTCAAGTTCTGTTTATTGCTGATAGATTCGCTATCATCCGAAATGCGGAGTCTGGAGCGTACACTTTGCCGTTTGTTATGCAGAATGACCAGGTTTTCATGAATAACGCGCTTATTCAGGATGGTTCGATTACCAACGCGAAGATCGGCAACTTTATTCAGTCCAACAACTACATCGCCGGGCAGCAAGGGTGGATGATTAACAAGAATGGAGGTTCTGAGTTCAGCGAGGTAACAGTAAGAGGGACAATCTACGCAACCGATGGTTGGTTTAAGGGTACTGTCTATGCAGAGCATATTGAAGGTGACGTGATGATCGCAGAGTCAAACACGATACCATTCAAGACATATTCAGATATTGATAGCGGAGATTATGAAATACTGAAAATTCATGGAGAAAACTTTGATAGGAGCATCGATACGAACCTGATTATACAAGTGAATTCTACATTCAGGAATACTTTTAGAGTAATTGTTCAGACTCCAGGGAAGGGGGAAAAAGAATTCTACAGTATAGACACTGGAAATGACGGAGGTACAAGAGCATACGCGCTACGTGGCTTCGATTTGCCAGCGGCTGGAAGAGGGCAAGAGAATAGGATCATCGTTAGGGTAACTCAAAGCGGGAGGGGGAGCAACATAAAAACATTCACTCCATGGGTTGAGAGAGATAATGGAAACACTGGACAAGAAACGTCTGATGGAGTCATATATAACACTGGTTTTATCAGAGAGAGGGCATACATATCGGCATACAGAAAAGGAAATAGAATAGTAGTCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1b3bb2a9dca6dd954c6ae381c111fbc14ef7bc00acdcc1c485256de83f97fe3b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7421
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and formulation into solid dosage forms of a novel bacteriophage lytic against Klebsiella oxytoca - potential to design a novel therapy against antibiotic induced GI disruption Brown,T.L., Petrovski,S., Hoyle,D., Chan,M., Lock,P. and Tucci,J. 2017-08-17 — GenBank