Protein

View in Explore
Genbank accession
AFB17742.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MSTLNVGTVNSTTLNLGVGGIVFNDATSITTAPGAPALGDVTNVTITTPAPDDILIWNGSQWVNQAPEGGIGLGNVASRPSSNLTNTIRWNTETEVLETYLDHNNNGSVAAWHAVGGRQLIAKAMRKDQWGSMDIYWGQTAGRNSGRYYAYEIFMNFYEQNGNNAEYYLRLMTGNGTIDSGGNYYYSVESQHINDGFPRNNENGQSYIRIVNRDDSYDLRSNGESTYLCHFLLSNTPNSSTANYWSFSYNCAGHSGQGGGYLRGGGSWRHPGPAEGNAYPCNGIRIYNNQAQRPVTSGVNVCISVFGISGQEGREMLDNYGQP
Physico‐chemical
properties
protein length:323 AA
molecular weight: 35156,95590 Da
isoelectric point:5,19647
aromaticity:0,10836
hydropathy:-0,54396

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIM8 A.HR3
[NCBI] 		869725 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFB17742.1 [NCBI]
Genbank nucleotide accession
JF974289.1 [NCBI]
CDS location
range 27937 -> 28908
strand +
CDS
ATGTCAACTCTTAATGTAGGAACAGTAAATTCAACGACTCTCAATTTGGGAGTTGGTGGTATTGTGTTTAATGATGCTACTAGCATCACTACTGCTCCTGGAGCACCAGCATTGGGTGATGTTACTAACGTAACTATTACTACTCCAGCACCAGACGATATTTTAATTTGGAATGGTAGTCAATGGGTGAACCAAGCACCTGAGGGAGGAATTGGTCTCGGTAATGTTGCTTCAAGACCATCTAGCAACCTGACTAATACAATTAGATGGAATACTGAGACTGAAGTATTAGAAACCTATCTTGACCATAATAATAATGGCAGCGTTGCTGCATGGCACGCTGTCGGTGGAAGACAGTTGATTGCTAAAGCAATGCGAAAAGATCAGTGGGGCAGCATGGATATTTACTGGGGTCAAACCGCTGGCAGAAACAGTGGTAGATATTATGCTTATGAAATTTTTATGAATTTCTACGAGCAAAATGGTAACAACGCAGAATATTATTTGCGTTTGATGACAGGTAATGGTACTATTGACAGTGGTGGTAACTACTATTATTCTGTTGAGTCACAGCATATTAACGACGGATTCCCAAGAAACAACGAAAATGGTCAGAGTTATATTAGAATTGTAAACCGTGACGATAGTTATGACCTTCGTAGTAACGGTGAGTCTACCTATCTGTGTCACTTCTTATTGTCGAATACTCCTAACTCCAGTACAGCAAACTATTGGTCGTTTAGTTACAACTGTGCTGGTCACTCTGGACAGGGCGGCGGATACTTAAGGGGTGGCGGTTCTTGGAGACATCCTGGACCTGCTGAAGGTAATGCATACCCTTGCAATGGTATCCGAATTTATAACAACCAGGCCCAGAGACCAGTTACGTCAGGCGTCAACGTCTGTATATCCGTATTTGGTATCTCAGGTCAAGAAGGTAGAGAAATGCTCGACAATTATGGACAACCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b2fced3afd9627a39ad0b58d0b7b42a73b112476befd3c443ebf50eaa8ded312
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6956
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIM8 A.HR3 Henn,M.R., Martiny,J., Weihe,C., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank