Protein

View in Explore
Genbank accession
QGZ18165.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,68
TF
Evidence RBPdetect2
Probability 0,78
Protein sequence
MAQHDYIISNQTFPNTRADINNVLQAIATNNSGTSAPTTLYAGQFWLDTNTPSSTTWTLYIHDGTDNIQFAQIDTTANTVNFIDSALASDVVINTSGAVTTTGAFTANGTIKLDGNYPTGTDNVALGDTALNSIEAGAINNVAIGDHAGTTISTGDNNVAVGKNALEAASTGCQNTAIGANALKSHTTVDNNTAVGYNALTLVTTGANNASVGAFSLAANTTGASNNAFGTAAMAKNTEGSSNVAIGCGALCTNTTASDNTAIGHNALKANTTASFNTAIGRKALQANTTGGSNSAIGLNALFSNTTGASNVAVGMSSLETNSTASNNTAIGFEALKDNTTGASNVALGFEALKANTTADNNISIGHQSGLTTTTGTRNIGIGRGTLYTNNANDNVAIGHTSQLYTSSGANNTSVGSCAMQNNTTGANNTAVGLNVMLSNTSGCYNHALGRNTLMDNTTGCYSTAIGQQALQNSSATGDTGNTAVGALTLYENTSGTANTAVGRLALSCNTTGGDNVAIGKDALQASTTATVNTAVGSFALKANTTGCCNVSIGNNSMRFNATGDGNVAIGNKALYCNNGSTPDFNIAIGRQAVYSTTTGYRNVGIGLNANYSGTTGYCNVSIGENAGYGITTGFKNVLVGPEAGCQLTTTEGNTFIGRFAGGNAVNGNNNVSLGINSGVDAVKNITGSDAHNIVIGNNGHTNAFIKIAFTVTSDLRDKTNFDKVSHGLDFINELEPVSFQFKKSREDDTPTGSVRYGFKAQDILALEGDNPVIIDNHDPENLKYKGEHLVPVLVNAIKELTARVKELENN
Physico‐chemical
properties
protein length:811 AA
molecular weight: 82677,32090 Da
isoelectric point:5,09501
aromaticity:0,05425
hydropathy:-0,18422

Domains

Domains [InterPro]
DC_2098
STR
2–185
DC_2098 DC_2098 DC_2098 DC_1422
DC_2098
STR
162–267
DC_2098 IPR011049 IPR011049 IPR036388 Coil
DC_2098
STR
342–455
DC_2098 IPR030392
IPR030392
CHP
714–811
IPR030392
QGZ18165.1
1 811
Architecture
STR
STR 2-811
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ18165.1
1 811
Domain Start End Length (AA) Confidence
N-terminal 1 89 89 0,2826
Central domain 90 400 312 0,8837
C-terminal 401 811 410 0,3909
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-89
Central
90-400
C-terminal
401-811

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC111P
[NCBI] 		2686461 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidatus Pelagibacter sp. HTCC7211
[NCBI] 		439493 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ18165.1 [NCBI]
Genbank nucleotide accession
MN698245.1 [NCBI]
CDS location
range 24562 -> 26997
strand +
CDS
ATGGCACAGCACGATTATATAATTTCAAACCAAACTTTCCCCAACACTAGAGCAGATATTAACAATGTTCTACAAGCAATCGCAACAAATAACTCAGGAACATCAGCACCTACTACATTATATGCTGGTCAATTCTGGCTAGATACAAACACTCCATCATCAACAACTTGGACTTTATACATACATGATGGAACAGATAATATTCAATTTGCACAGATAGATACAACAGCAAACACAGTTAATTTTATAGATTCAGCTTTAGCAAGTGATGTTGTTATTAATACATCTGGTGCAGTTACAACAACAGGTGCATTTACTGCAAATGGCACAATAAAATTAGATGGTAACTATCCAACAGGGACAGATAATGTTGCTTTAGGAGATACTGCTTTAAATAGTATTGAAGCTGGTGCTATAAATAATGTTGCTATCGGAGATCATGCTGGAACAACAATATCAACAGGAGATAATAATGTTGCAGTAGGTAAAAATGCTTTAGAAGCCGCTTCTACAGGTTGTCAAAATACAGCAATAGGTGCTAACGCACTAAAGTCACATACAACAGTAGATAATAATACAGCAGTTGGTTATAATGCTTTAACACTTGTTACAACAGGAGCTAACAATGCATCAGTGGGAGCTTTTTCTTTAGCCGCAAACACAACAGGTGCAAGTAATAATGCATTTGGAACTGCCGCTATGGCTAAAAACACAGAGGGTAGTTCTAATGTAGCGATTGGGTGTGGTGCTTTATGTACCAATACAACAGCTAGTGATAATACAGCAATTGGTCATAATGCTTTAAAAGCTAACACAACAGCTTCTTTTAATACAGCGATTGGTAGAAAAGCACTTCAAGCTAATACTACAGGTGGAAGTAATTCAGCAATTGGTCTTAATGCTTTATTTTCAAATACTACAGGAGCATCTAATGTTGCAGTTGGAATGTCATCTTTAGAAACAAATTCAACAGCTTCCAATAACACAGCAATAGGTTTTGAGGCTTTAAAGGATAATACTACAGGTGCTTCTAATGTAGCATTAGGTTTTGAGGCTTTAAAAGCAAATACAACAGCAGATAATAATATATCAATAGGTCATCAATCAGGTTTAACAACTACTACAGGTACAAGAAATATAGGTATTGGTAGAGGGACTTTGTATACTAATAATGCAAACGACAATGTAGCGATTGGTCATACATCACAATTATATACTTCATCAGGTGCAAATAATACATCAGTTGGAAGTTGTGCTATGCAAAATAACACAACAGGTGCAAATAACACAGCAGTAGGTTTAAATGTAATGCTTTCAAATACATCAGGTTGTTACAATCATGCACTTGGTAGAAATACTTTAATGGATAACACAACAGGTTGTTATTCAACTGCTATTGGACAACAAGCATTACAAAATAGTTCAGCTACAGGAGACACAGGTAATACAGCAGTTGGTGCTTTAACTTTATATGAAAATACATCAGGCACAGCTAATACGGCAGTCGGTAGGTTAGCTTTATCTTGTAACACAACAGGTGGAGATAATGTTGCAATAGGAAAAGATGCTTTACAAGCTAGCACAACGGCAACTGTAAACACAGCTGTTGGTAGTTTCGCTTTAAAAGCTAACACAACAGGGTGTTGTAATGTTTCTATAGGTAATAATTCAATGAGGTTTAATGCAACAGGCGATGGGAATGTTGCTATAGGAAATAAAGCATTATATTGTAACAATGGCTCAACACCAGATTTTAATATAGCAATAGGCAGACAAGCTGTTTACTCAACTACAACAGGCTATAGGAATGTTGGTATAGGATTAAATGCAAATTACTCTGGAACTACAGGATATTGTAATGTTAGTATAGGTGAAAATGCTGGTTATGGAATTACAACAGGATTTAAAAATGTTCTTGTAGGCCCAGAAGCTGGTTGTCAATTAACTACTACAGAGGGTAATACTTTTATTGGTAGATTTGCTGGTGGTAATGCAGTTAATGGAAATAATAATGTTTCTCTTGGAATTAACTCTGGTGTAGATGCTGTTAAAAATATAACAGGAAGTGATGCACATAATATTGTAATTGGTAATAATGGACACACAAATGCTTTTATAAAAATAGCATTTACAGTTACTTCAGATTTAAGAGATAAAACAAATTTTGATAAAGTTTCACATGGTTTAGATTTTATTAACGAATTAGAACCTGTTTCATTTCAATTTAAAAAATCAAGAGAAGATGATACACCTACAGGAAGTGTAAGATATGGTTTTAAAGCACAAGATATTCTTGCTCTTGAGGGAGATAATCCTGTTATAATAGACAATCACGACCCAGAAAACTTAAAATACAAAGGTGAACATTTAGTTCCTGTATTAGTCAATGCAATAAAAGAATTAACAGCAAGAGTAAAAGAATTAGAAAATAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e42e1fdd8a1295657c71ef20ee5f31ea371850ceb1acc679a7d03ca9adf14421
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3589
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank