Protein

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Genbank accession
XYH46218.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSIIQGTALSAGGGGFYPYELNQSLRFNDDDSAYLSWTPASAGNRKTWTWSGWVKRGNLGIYADLFTADATTPQTAIRFQNDDRLQVDYWNGSSYSFRLKTNAVYRDTSSWYHFVVAVDTTQATSSDRVKIYVNGQEVTSFNVASYPSINFETEINNTRSHGIGSFTGGAVLELFDGYLSEVNFIDGTALDATSFGEFKDGIWVPKKYGGSYGTNGFYLPFNNDYTVEGFNTVTYTGNGGDHYIGGVGFEPDFVWVKDRDTGSSHRLHDSVRGAGLKLSSDSTAAESDESSSFTAFNADGFSLAGSAGAYNTSGRKYVAWAWDMGTGSPVSNTDGSITSTVKANPDYGFSIATYTGNGTAGATVGHGLSSAPQMVIIKNRIDGTRPWTIYHEAVHPTDPADYRLQFDTSAITNDNTTWNDTEPTASVVTLGSSTWNNKSGDSNVMYCFHSVAGYSDFGSYTGTGASGNTVTTGFKPAFVMIKGATELTDWIMFDNTRDPSNSFDNRLRANTSGAEDTAAYVDITDTGFEMTSNAYNTSSETYIYMAFADKREAAFWLDQSGNNNDWTNNNMQESDISLDSPTNNFATLSPIACGKNSTGGLPVLSEGNLAVYESTASYSTSLSTIPVSSGKWYFEVLINDVTYPAVGWINVDEPSTFFSENNMYLGKKANSYAYFYTGVTYNNNTAAAYGTGFSAGDVIGCALDLDAGTMTFYRNNTSQGTAFSSLSGTFVGGVTVQSSKQYANFGQDSSFAGNKVAQGNVDGNGRGDFYYSPPAGYLALCTANLPEPAILDAGQHFNTVLYTGNGSTQSITGVGFQPDFTWIKERNDNSSHQLHDVIRGATKRLESNNTTAEGTFTNGLTSFDADGFSLGNYVAVNQSGISHVAWNWKADNTSGTTNTDGTITSTVSANPTAGFSIVTYTGANSSGADTVGHGLSSKPEFIIVKSRTASGLTWDSWTVGHTSLDWLNNSTMWLNQTNAVTDGYLRAPWDNRRPTNTVFYVYNNSGSGINYSGENYVAYCWHGVEGYSKFGSYTGNYSTDGPFVYTGFKPAFVLIKNTGYTGDWVLFDTARSTYNYMDDVLYPHLSSAEQTSIGAANSIDVVSNGFKIRANWTAINDTYTYIYMAFAENPFKYSNAR
Physico‐chemical
properties
protein length:1137 AA
molecular weight: 123086,16510 Da
isoelectric point:4,65281
aromaticity:0,13720
hydropathy:-0,39367

Domains

Domains [InterPro]
IPR013320
STR
22–187
IPR013320 IPR055906 IPR001870 IPR055906
G3DSA:2.60.120.200
STR
23–194
G3DSA:2.60.120.200 DC_1713
PF13385
LEC
30–187
PF13385 IPR045129
IPR043136
STR
595–790
IPR043136
IPR013320
STR
595–727
IPR013320
IPR003877
STR
629–749
IPR003877
cd11709
STR
630–729
cd11709
IPR003877
STR
631–746
IPR003877
XYH46218.1
1 1137
Architecture
STR
STR
STR
STR 22-194 | STR 230-790 | STR 793-1130 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYH46218.1
1 1137
Domain Start End Length (AA) Confidence
N-terminal 1 581 581 0,0944
Central domain 582 780 200 0,5587
C-terminal 781 1137 356 0,9850
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-581
Central
582-780
C-terminal
781-1137

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage CRP-406
[NCBI] 		3417978 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Roseobacter sp.
[NCBI] 		1907202 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYH46218.1 [NCBI]
Genbank nucleotide accession
PV211008 [NCBI]
CDS location
range 9490 -> 12903
strand -
CDS
ATGTCAATCATTCAAGGTACTGCGCTGTCTGCTGGTGGGGGTGGGTTTTATCCTTACGAATTAAATCAGTCACTACGCTTTAACGATGATGACAGTGCTTATCTAAGCTGGACCCCTGCAAGTGCTGGCAACCGCAAGACGTGGACTTGGAGTGGTTGGGTTAAGCGTGGTAATTTAGGTATATACGCTGATTTATTTACGGCTGATGCAACCACCCCACAGACAGCTATACGATTTCAAAATGACGATAGACTTCAAGTAGATTATTGGAATGGGTCTAGTTATAGTTTTCGTTTAAAAACAAACGCTGTTTATCGGGACACTTCTTCTTGGTATCATTTTGTTGTTGCAGTAGACACCACGCAAGCAACATCATCAGATCGTGTAAAAATATATGTTAATGGTCAGGAAGTAACGTCATTTAACGTGGCTTCTTATCCATCAATTAATTTTGAAACAGAGATTAATAATACACGATCACATGGCATTGGTAGTTTTACAGGTGGTGCAGTCCTTGAGCTTTTCGACGGCTACCTATCCGAAGTCAACTTCATCGACGGTACAGCCCTAGACGCAACCAGCTTTGGTGAATTTAAGGATGGCATCTGGGTTCCTAAGAAATACGGCGGCAGCTATGGCACGAATGGGTTTTACCTACCGTTTAACAACGACTACACAGTCGAAGGGTTTAACACTGTTACTTATACAGGAAACGGGGGTGATCATTACATTGGTGGGGTTGGTTTTGAACCAGACTTTGTTTGGGTAAAGGACAGAGATACTGGATCATCACATAGACTGCATGACAGTGTAAGGGGGGCGGGTCTAAAGTTATCTAGTGACAGTACCGCCGCAGAAAGTGATGAAAGTTCGTCTTTTACAGCTTTTAACGCAGATGGCTTTTCTTTAGCTGGAAGCGCAGGTGCATACAATACATCAGGACGGAAATACGTCGCATGGGCATGGGACATGGGGACCGGCTCACCCGTATCAAACACAGACGGATCAATTACCAGCACGGTGAAGGCTAACCCTGACTATGGGTTTAGTATTGCTACATATACAGGCAATGGCACTGCGGGGGCAACCGTAGGTCACGGTTTGTCATCTGCTCCGCAAATGGTAATTATTAAGAACCGCATTGATGGGACTAGACCTTGGACTATTTATCACGAAGCTGTCCACCCAACTGACCCTGCGGATTACAGGTTGCAGTTTGACACATCAGCGATAACAAACGACAACACGACTTGGAACGACACAGAGCCAACAGCTAGTGTTGTTACGTTAGGGTCTTCCACTTGGAACAATAAGTCTGGTGATAGCAATGTAATGTACTGCTTCCACTCAGTCGCAGGGTATAGTGACTTTGGGTCATACACGGGGACAGGTGCTTCGGGCAACACAGTGACAACAGGGTTCAAACCTGCGTTTGTTATGATTAAAGGTGCAACTGAACTTACTGATTGGATCATGTTTGACAATACAAGAGATCCATCTAATTCTTTTGACAATCGTTTGAGGGCAAATACAAGTGGGGCAGAGGATACAGCCGCTTATGTAGATATAACCGATACTGGCTTTGAAATGACCAGCAATGCTTATAACACATCAAGCGAAACCTACATCTACATGGCCTTTGCCGACAAGCGTGAGGCTGCATTCTGGCTAGACCAATCAGGCAACAACAACGATTGGACTAACAACAATATGCAGGAGAGTGACATCTCCTTGGATAGCCCGACGAATAACTTTGCTACACTGTCACCGATTGCGTGTGGTAAAAACTCTACTGGTGGGTTGCCTGTTTTGTCTGAAGGTAACTTAGCAGTTTATGAAAGCACAGCTTCTTATTCTACGTCCTTGTCTACAATCCCTGTATCAAGCGGCAAGTGGTATTTTGAAGTTTTAATAAACGATGTCACATATCCTGCCGTTGGCTGGATAAATGTCGATGAACCTTCAACATTCTTTTCTGAAAACAATATGTATTTAGGAAAGAAAGCAAATAGTTATGCTTATTTTTACACTGGGGTAACGTATAATAATAATACAGCTGCGGCTTATGGCACAGGCTTTAGTGCAGGGGATGTTATTGGTTGTGCTTTAGATTTAGATGCTGGTACGATGACATTTTATCGCAACAATACTAGCCAAGGTACTGCATTTAGCTCTTTGTCTGGAACTTTTGTAGGTGGTGTCACTGTTCAATCTTCTAAGCAATATGCCAACTTCGGGCAAGACAGTTCATTCGCAGGGAACAAAGTTGCGCAAGGGAACGTCGATGGCAATGGACGTGGTGACTTCTACTATAGCCCACCCGCAGGATACCTAGCACTGTGTACAGCTAACCTGCCTGAACCTGCTATCCTTGATGCTGGTCAGCATTTTAATACTGTGTTGTATACGGGTAATGGCTCTACGCAGAGCATCACAGGTGTTGGGTTCCAGCCTGACTTTACTTGGATTAAAGAACGTAATGATAATTCATCACATCAGTTACATGATGTTATTCGTGGTGCAACAAAGCGTCTTGAGAGTAACAACACTACGGCAGAAGGCACATTTACAAACGGGTTAACATCATTTGACGCTGATGGGTTTTCTCTTGGTAATTATGTTGCGGTTAACCAAAGCGGGATAAGCCATGTCGCATGGAACTGGAAGGCAGACAACACATCAGGAACCACCAACACCGACGGGACAATCACAAGCACTGTCTCTGCAAACCCAACGGCTGGGTTTAGTATTGTAACATACACAGGTGCAAACTCTAGCGGAGCAGATACGGTTGGTCATGGTTTAAGTAGCAAACCAGAGTTTATTATTGTTAAATCTAGAACAGCTTCTGGATTGACGTGGGATAGCTGGACCGTTGGTCACACATCGTTAGATTGGTTGAATAACTCAACGATGTGGTTAAACCAAACTAATGCTGTTACGGATGGTTATCTACGTGCCCCTTGGGATAATAGACGTCCAACAAATACCGTTTTCTATGTATATAACAACTCTGGTTCAGGTATAAACTATAGCGGAGAAAACTATGTTGCATATTGCTGGCATGGTGTCGAAGGCTACAGCAAGTTTGGCAGCTACACAGGGAACTACAGCACAGATGGGCCGTTTGTGTACACTGGGTTTAAACCTGCGTTTGTGCTTATAAAAAATACTGGTTATACTGGAGATTGGGTGCTTTTTGATACTGCACGTTCAACATATAACTATATGGATGATGTCCTTTATCCTCATCTATCTAGTGCAGAACAAACATCCATAGGTGCAGCTAACTCTATAGACGTAGTTTCAAACGGGTTCAAGATAAGGGCTAACTGGACAGCAATAAATGACACTTACACCTACATATACATGGCCTTCGCAGAGAACCCATTCAAATACAGTAACGCACGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
976af6e773e8e3b6c7b95fab5c716a563767ca6b8a8d0294b5e4088d335e48fa
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9065
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50