Protein

View in Explore

Genbank accession

QTZ82847.1 [GenBank]

Protein name

peptidoglycan DD-metalloendopeptidase

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MQYYKSSNTNFNKNGDITLQLNSGTLRVELNTGINEIEFEIPYDKQKRWEKVNEWGVVKCKVFYSKNRQLYRIYNVTKGMFGLKCSARHIFFDLIKHTILDNRAVATNGQRALDIILDGTNFKGHSDIEKIATAYFVKLNAIQAINGDKENSFRNRWGGEMLYDNFDIYVNTRIGKDNGIRIKYKRNMEDVSLTVDRDSIITKGCPVAYDGKMLPEKYICSQLINKYPIVCEGFIDVSDLKLKDPENQDDEGFDTEEELYNAMRERMVYLYNNGLDKPKVSGSVKLANLANTIDYKDFKKLERVGIGDTVTIDHEEIGIDIKTRCIVIEWDLVTEEIINTEFGDVEVNYFDKQEIVNGKLENILNNNGTVNPSKMEGIIDALQTKFKALRDVAQPQHVLGMLFEDKIKGSKTYGAMAIGSMGLMIASKRLPDDSDWDWNTFIGGGFAMADWLIGKLKTVLIQNMDASFEIDLNKPGGALFRNNGKDAILIENNMIKLFNWKKNGDFIGGLMALIKGDDENKPLIGLSNDIDSALALGYAKKDSISVPSYIEFDKYNILEDSGGKPVRIYEEVDFKGNKVYNIDIRSDNGENNLYVGDHYVNITTENNEIVVSNDGIRMGKDKSLYYDARTGELRCNDIVLNGVIKNTSGTTVFDPNAPIGGGADGDWQNGVMSSNCFRYLKGYEGLGRYEYRDSGGVLTIGYGVTHSEPDIYAKLKANEPVPEELAAKESYTLKINRYGKPIVNKVKALGCTTQQQFDALVDLAFNAGTGVIGANNSLMNAIRRNPTDEAYIRPIWENFYIHDDAGNRLEGLRLRRIAEANIYFQGRYEKRQIPILGRNGNPTGSVVTENNGDGWLPPRIDSTGNFKTVNNAYGNGWIIPVTGGQVTALFGHYPSGSPHSGTDFGVPVGTPVRASKSGTVIKKAELDYSYGYHLFIDHGDGLVTIYAHNSELLVNQGDTVKAGQVIAKSGSTGNSSGPHCHWELRVNGTPVDVAPSLRIGDTV

Physico‐chemical properties

protein length:	1003 AA
molecular weight:	111796,81120 Da
isoelectric point:	5,57053
aromaticity:	0,09372
hydropathy:	-0,42662

Domains

Domains [InterPro]

DC_1274
ATT
2–439

DC_1274 IPR023346 IPR011055

IPR007119
Unmapped
29–343

IPR007119 IPR023347 IPR011055

IPR010572
ENZ
91–338

IPR010572 IPR002196 IPR016047

IPR050570
Unmapped
784–992

IPR050570

cd12797
ENZ
899–984

cd12797

QTZ82847.1

1 1003

Architecture

ATT

STR

ATT

RBD

ATT 2-439 | STR 640-670 | ATT 671-824 | RBD 825-998 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1274	ATT	DC_1274	2	439	Novel HMM	DC_1274	N-terminal	Low	Positional only	124 proteins / 124 hits
IPR007119	Unmapped	-	29	343	InterPro	Phage tail spike protein, N-terminal domain	-	-	-	-
IPR010572	ENZ	DC_0675	91	338	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
IPR023346	STR	IPR023346	640	831	Merged direct domain	Lysozyme-like domain superfamily	Central	Low	Positional only	29 proteins / 29 hits
IPR023347	ATT	IPR023347	671	824	Merged direct domain	Lysozyme domain superfamily	N-terminal	Low	Positional only	1 proteins / 1 hits
IPR002196	ENZ	DC_0077	681	819	InterPro cluster	Glycoside hydrolase, family 24	Central	High	Text match	6 proteins / 7 hits
IPR050570	Unmapped	-	784	992	InterPro	Bacterial cell wall metabolism enzyme	-	-	-	-
IPR011055	RBD	IPR011055	828	993	Merged direct domain	Duplicated hybrid motif	C-terminal	Low	Positional only	24 proteins / 24 hits
IPR011055	RBD	IPR011055	860	998	Merged direct domain	Duplicated hybrid motif	C-terminal	Low	Positional only	24 proteins / 24 hits
IPR016047	ENZ	DC_0060	898	992	InterPro cluster	M23ase, beta-sheet core domain	C-terminal	High	Text match	24 proteins / 46 hits
cd12797	ENZ	DC_0060	899	984	InterPro cluster	cd12797	C-terminal	High	Text match	24 proteins / 46 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

QTZ82847.1

1 1003

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	483	483	0,8721
Central domain	484	686	204	0,9200
C-terminal	687	1003	316	0,1478

Note: Constraints were applied during segmentation.
Fixed 43 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-483

Central
484-686

C-terminal
687-1003

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Clostridium phage phiCp-B [NCBI]	2814703	No lineage information
Host	Clostridium perfringens [NCBI]	1502	cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Genbank protein accession

QTZ82847.1 [NCBI]

Genbank nucleotide accession

MW478290 [NCBI]

CDS location

range 11901 -> 14912
strand +

CDS

TTGCAATATTATAAAAGTAGTAATACTAATTTTAATAAAAATGGTGATATAACACTTCAATTAAATAGTGGAACTTTAAGAGTAGAATTAAATACTGGAATAAATGAAATAGAATTTGAAATTCCTTATGATAAACAGAAGAGATGGGAGAAAGTTAATGAATGGGGAGTTGTAAAATGTAAGGTTTTTTATAGTAAAAATAGACAACTTTATAGAATTTATAATGTAACTAAAGGTATGTTTGGACTAAAGTGTAGTGCAAGACATATCTTTTTTGATTTAATAAAGCATACTATTTTAGATAATAGAGCTGTTGCAACTAATGGACAACGAGCTTTAGATATAATTTTAGATGGAACTAATTTTAAAGGACATTCAGATATAGAAAAGATAGCAACAGCTTATTTTGTTAAACTTAATGCAATTCAAGCCATAAACGGAGATAAAGAGAATAGTTTTAGAAACCGTTGGGGCGGTGAAATGCTTTATGATAACTTTGATATTTATGTTAATACTAGAATTGGTAAAGATAATGGTATTAGGATTAAATATAAAAGAAATATGGAGGATGTAAGTTTAACAGTAGATAGAGATTCTATAATAACTAAAGGATGTCCAGTTGCATATGATGGGAAAATGTTACCTGAAAAATATATTTGTAGCCAATTAATTAATAAATATCCTATAGTTTGCGAAGGTTTTATTGATGTAAGTGATTTAAAATTAAAAGACCCTGAAAATCAAGATGATGAAGGTTTTGATACAGAAGAAGAATTATATAATGCTATGAGAGAAAGAATGGTATATTTATATAATAATGGATTGGATAAACCTAAGGTAAGTGGAAGTGTTAAGTTAGCAAATCTAGCTAATACGATAGATTATAAAGATTTTAAAAAACTTGAAAGAGTTGGTATTGGAGATACGGTTACAATAGACCATGAGGAAATTGGAATTGACATAAAAACAAGATGTATAGTAATTGAATGGGATTTAGTAACAGAAGAAATTATAAATACTGAGTTTGGAGATGTTGAAGTAAATTATTTTGATAAACAAGAAATTGTTAATGGTAAATTAGAAAATATATTAAATAATAATGGTACTGTTAATCCAAGCAAGATGGAAGGAATTATAGATGCATTACAAACTAAATTTAAAGCACTTAGAGATGTGGCTCAACCTCAACATGTTTTGGGAATGTTGTTTGAGGATAAGATAAAAGGTTCTAAAACTTATGGAGCTATGGCAATAGGTAGTATGGGATTAATGATAGCTAGTAAAAGGTTACCAGATGATAGTGATTGGGATTGGAATACTTTTATTGGCGGTGGCTTTGCCATGGCAGATTGGCTAATAGGTAAGTTAAAAACAGTTCTTATTCAAAATATGGATGCTTCTTTTGAAATTGATTTAAATAAACCTGGAGGAGCTTTATTTAGAAACAATGGAAAAGATGCTATATTAATCGAAAACAATATGATTAAACTATTTAATTGGAAAAAGAATGGAGACTTCATAGGTGGCTTAATGGCACTAATTAAAGGAGATGATGAAAATAAACCCCTTATAGGTTTATCTAATGATATCGATAGTGCTTTAGCTTTAGGATATGCAAAAAAAGATTCTATTAGCGTACCTTCGTATATCGAATTTGATAAATACAATATTTTAGAAGATTCAGGTGGAAAGCCAGTAAGAATATATGAAGAAGTAGATTTTAAAGGAAATAAAGTTTATAACATAGATATTCGTTCAGATAATGGAGAAAATAATCTTTATGTTGGAGACCATTATGTAAATATTACAACTGAAAACAATGAAATTGTAGTATCAAATGATGGTATTAGAATGGGGAAAGATAAATCTTTATATTATGATGCTAGAACTGGAGAATTGAGATGCAATGATATAGTGTTAAATGGTGTTATTAAAAATACAAGTGGTACTACTGTATTTGATCCTAATGCTCCAATTGGCGGAGGAGCTGATGGAGATTGGCAAAATGGTGTAATGAGTTCTAATTGCTTTAGATACCTAAAAGGTTATGAAGGTTTAGGTAGATATGAATATCGAGATAGTGGTGGTGTTCTTACCATTGGTTATGGGGTAACTCATAGTGAACCCGATATATACGCTAAATTAAAGGCTAATGAACCAGTTCCAGAAGAATTAGCAGCTAAAGAAAGTTATACATTAAAAATTAATAGATATGGTAAACCTATAGTAAATAAAGTTAAAGCTTTAGGTTGCACAACTCAACAGCAATTTGATGCTTTAGTAGATTTAGCTTTTAATGCAGGAACTGGTGTTATAGGTGCTAATAATAGTCTTATGAATGCTATAAGACGAAATCCAACTGATGAAGCTTATATAAGACCTATATGGGAAAATTTCTATATACATGATGATGCAGGGAATAGGTTAGAAGGTTTAAGACTTAGAAGAATTGCAGAAGCAAATATATATTTCCAAGGTCGTTATGAAAAAAGACAAATTCCTATACTGGGTAGAAATGGGAATCCAACTGGAAGTGTTGTTACAGAAAACAATGGAGATGGATGGTTACCACCTCGAATAGATTCTACTGGTAATTTTAAAACAGTAAATAATGCTTATGGTAACGGATGGATTATTCCCGTTACTGGTGGACAAGTAACCGCACTCTTTGGACACTATCCATCAGGCTCTCCACATAGTGGCACAGATTTTGGTGTACCTGTTGGAACGCCAGTAAGAGCTAGTAAAAGTGGAACTGTTATTAAAAAAGCTGAATTAGATTATAGTTATGGATATCATTTATTTATAGATCATGGCGATGGTTTAGTTACCATCTATGCTCATAACTCAGAATTACTTGTAAATCAAGGAGATACAGTAAAAGCAGGACAAGTTATAGCTAAGTCAGGCTCAACTGGAAATTCATCAGGCCCACATTGCCACTGGGAACTTAGAGTTAATGGTACACCAGTTGATGTAGCTCCTTCTTTAAGAATTGGAGATACAGTATAA

Genome Context

Tertiary structure

PDB ID

8c601ebfd4a273111baf2dc5d33d736243f091e8e35d4fd1a26770c674475dce

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,2858

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Isolation and characterization of four temperate phages infecting Clostridium perfringens and evidence of pseudolysogeny involving large plasmid-like prophages	Allen,M.-M., Sbaghdi,T., Garneau,J.R., Duclos,A., Alix-Pare,O., Gaucher,M.-L., Labrie,S.J. and Fortier,L.-C.	1990-11	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature