Protein

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Genbank accession
ATB56190.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSIISGIAGLTSSEVLALINRGGEEGTAGLYACKTILNEHRRVCTKEYHLVGKYLDGADNPDVWFPIPGGGGGTVVYDNRFLTLTSGTLAGSSATRCVIDQTKFPINGNFLEVTCKIGSVVNGAGGQRIACFGFAPAFNSLPISNRALFLRSGNVWYCAYASQAVAVSSLPLGRNLQSGDICTVRLDRQEGSSNIDIVRFYVNGQKQYETTNIPAENCYTGIGVFTDADTTTAMSIAIDYFGVKFVP
Physico‐chemical
properties
protein length:247 AA
molecular weight: 26353,54240 Da
isoelectric point:6,11749
aromaticity:0,09717
hydropathy:0,07854

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATB56190.1
1 247
Domain Start End Length (AA) Confidence
N-terminal 1 13 13 0,9812
Central domain 14 212 200 0,0025
C-terminal 213 247 34 0,9960
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-13
Central
14-212
C-terminal
213-247

Taxonomy

  Name Taxonomy ID Lineage
Phage Methanosarcina spherical virus
[NCBI] 		2035535 No lineage information
Host Methanosarcina mazei Go1
[NCBI] 		192952 Methanobacteriota > Methanomicrobia > Methanosarcinales > Methanosarcinaceae > Methanosarcina > Methanosarcina mazei

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATB56190.1 [NCBI]
Genbank nucleotide accession
MF186604 [NCBI]
CDS location
range 7804 -> 8547
strand +
CDS
ATGTCTATAATTTCAGGGATTGCTGGCTTAACCTCTTCGGAGGTTTTAGCTTTAATTAATAGAGGAGGAGAAGAAGGGACAGCCGGTTTATACGCATGTAAAACCATACTTAATGAACATCGACGTGTCTGTACTAAGGAGTATCATCTAGTCGGTAAATATCTTGATGGTGCAGATAATCCAGATGTCTGGTTTCCGATTCCAGGAGGAGGAGGCGGTACTGTAGTTTATGATAACCGGTTCTTAACCTTAACTTCTGGAACACTTGCGGGTTCATCAGCTACAAGATGTGTAATTGATCAGACGAAGTTTCCGATAAATGGGAACTTTTTGGAAGTTACATGTAAAATCGGATCTGTGGTAAATGGAGCAGGAGGACAGCGTATTGCATGTTTTGGTTTTGCACCAGCTTTTAATTCTCTTCCTATTTCAAATAGGGCACTTTTCCTAAGGTCTGGCAATGTATGGTATTGTGCATACGCAAGTCAAGCCGTTGCTGTTTCATCTCTTCCATTAGGCAGAAATTTGCAGAGCGGTGATATTTGCACCGTAAGACTTGATAGACAGGAAGGAAGTTCAAACATTGACATTGTCAGGTTTTACGTTAACGGACAGAAGCAGTACGAAACTACTAATATCCCTGCAGAGAACTGTTACACAGGAATAGGAGTTTTCACTGATGCAGACACTACCACAGCAATGAGTATTGCTATAGACTATTTCGGTGTTAAGTTCGTACCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b771b7ff64db24cc56d907c8b8441b7563586b62dfa83535355fb5552776aa5e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7177
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
MetSV, a novel archaeal lytic virus targeting Methanosarcina strains Weidenbach,K., Nickel,L., Neve,H., Alkhnbashi,O.S., Kunzel,S., Kupczok,A., Bauersachs,T., Cassidy,L., Tholey,A., Backofen,R. and Schmitz,R.A. 2017 28878086 GenBank