Protein

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Genbank accession
YP_008766884.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MHRIDTKTAQKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKSDGTVKTALENLGLGEAAKRNVGTGANQIPDMSLFASSNTATAAAQKFPSGLILQCGQLNGSPNVSSTYGMRFPMTFSRVLAVTVTLNVTGAAGQPTVSATNVHNTGFNITVSPGSGYGASSDAYYIAMGY
Physico‐chemical
properties
protein length:216 AA
molecular weight: 22637,08140 Da
isoelectric point:6,82246
aromaticity:0,06944
hydropathy:-0,24491

Domains

Domains [InterPro]
DC_0512
STR
1–172
DC_0512
G3DSA:2.60.40.3940
RBD
122–216
G3DSA:2.60.40.3940
IPR054075
RBD
132–216
IPR054075
YP_008766884.1
1 216
Architecture
STR
RBD
STR 1-172 | RBD 173-216
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SfIV
[NCBI] 		1407493 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008766884.1 [NCBI]
Genbank nucleotide accession
NC_022749.1 [NCBI]
CDS location
range 17011 -> 17661
strand +
CDS
ATGCATCGTATAGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACTGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAGCTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGATCAGTTGCTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGCAGCTAAAAGGAATGTAGGTACAGGGGCGAATCAGATACCTGATATGAGCCTGTTCGCGTCAAGTAATACCGCAACGGCTGCTGCGCAAAAATTTCCGTCTGGATTAATTTTACAGTGCGGTCAGTTGAATGGCTCCCCTAATGTATCTTCAACATACGGGATGAGGTTCCCGATGACATTCTCAAGAGTCCTTGCTGTCACAGTTACATTGAACGTTACTGGCGCGGCTGGGCAGCCGACTGTATCGGCGACAAATGTCCATAACACTGGATTTAATATTACTGTGTCGCCCGGTTCAGGATATGGTGCATCTTCTGATGCGTATTACATTGCAATGGGATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4ee22382bdd813f1d272b7ab1590a234f515ee23e114e7cd34593a74b63ce520
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8203
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50