Protein

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Genbank accession
ACV41136.1 [GenBank]
Protein name
head completion protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSARWREAPVTGGAYSDETRAWTVQDTVNWIPEAAERGGGRSSSMLRCAPGAAVFCVPEAANPAPVRGLHDVEDKLFAVIGTKLWQITTAGVAIPRGTIPGVERVCMAHNQIAGGNQLVIGNGTSGYVYNTYTELLAEQITGEGFPGFKACDYVDSYIVGVEPSGRYWFHSALADASSYRTLDRYEAESQPDRIVGLAVIHRTVFVLGKRSGEFFYNSGASEGTFQRHAGTEMQTGCASQHTIQQMGNTVFWLGHDGRVYRLDGYQPVRISTPPLEQAITACNHEEAFAFTFDDRGHQVYYLTFPDGMTWGFDIATREWHRRESFGVSRWRMNACVRWAAHWVAGDFANGKLYTLDWGMPWEHGEVIERRRVNGVLHDHQNRMTVDAVELVFGTDALGGYKGPGDLTPPQPAGPTLSGNAPDAVNKQAYRYAYTMKPGATPIVAVRVVSGALPEGLSLDPKGVLSGTVEVAGLFAGAKRAYPFTIRVTDANGLWASVSDTMTITTAEVICGTSTSYSGGQAFPNIVHVQLGSQTGLVTLAYATAANPDKFQVWIGGQKVIDTGYHGDTSYQVQLDADLKNRGLPQETITQRPGGESTPEGQFADKNYETATFQKTTADTIAEVRVYSPLAGTGWQFHLDCPT
Physico‐chemical
properties
protein length:642 AA
molecular weight: 69858,27270 Da
isoelectric point:5,67113
aromaticity:0,10436
hydropathy:-0,27975

Domains

Domains [InterPro]
DC_1658
STR
6–415
DC_1658 DC_2153
IPR021098
STR
74–221
IPR021098 IPR013783
SSF63825
STR
191–358
SSF63825 PF05345
ACV41136.1
1 642
Architecture
STR
STR 6-505 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ACV41136.1
1 642
Domain Start End Length (AA) Confidence
N-terminal 1 501 501 0,7222
Central domain 502 631 131 0,5722
C-terminal 632 642 10 0,8818
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-501
Central
502-631
C-terminal
632-642

Taxonomy

  Name Taxonomy ID Lineage
Phage Xylella phage Xfas53
[NCBI] 		670252 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xylella fastidiosa subsp. multiplex
[NCBI] 		644357 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xylella > Xylella fastidiosa

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ACV41136.1 [NCBI]
Genbank nucleotide accession
GQ421471 [NCBI]
CDS location
range 27411 -> 29339
strand +
CDS
ATGAGCGCCCGATGGCGTGAAGCCCCTGTGACCGGAGGCGCTTATAGCGACGAGACACGCGCCTGGACAGTGCAGGATACGGTGAACTGGATTCCAGAAGCCGCCGAACGTGGTGGAGGGCGTTCGTCCTCCATGTTGCGCTGCGCTCCTGGGGCGGCTGTGTTTTGTGTCCCTGAAGCCGCTAACCCTGCTCCGGTGCGCGGATTGCATGATGTGGAAGACAAGCTGTTCGCAGTGATCGGTACGAAGCTGTGGCAGATCACCACAGCGGGGGTGGCCATCCCTCGCGGGACCATTCCAGGCGTTGAGCGTGTCTGCATGGCGCACAACCAGATTGCCGGAGGGAATCAGTTAGTGATCGGTAACGGTACCTCCGGCTACGTCTACAACACCTATACGGAATTACTCGCCGAACAGATCACCGGTGAAGGGTTCCCAGGGTTCAAGGCGTGCGATTACGTGGACAGCTACATTGTGGGTGTTGAGCCTTCGGGCAGGTACTGGTTCCATTCCGCTCTGGCCGACGCCTCCAGTTACCGCACACTTGACCGTTATGAGGCCGAAAGCCAGCCAGACCGCATTGTCGGATTGGCCGTGATCCATCGCACTGTTTTCGTGCTGGGCAAACGCTCTGGGGAGTTCTTCTATAACAGCGGCGCATCGGAAGGTACTTTTCAACGCCATGCAGGCACTGAAATGCAAACAGGCTGCGCCTCCCAGCACACCATCCAACAGATGGGCAATACGGTTTTCTGGCTGGGACATGATGGCCGTGTGTATCGGCTAGACGGCTATCAACCGGTTCGAATCAGCACACCGCCGCTGGAGCAGGCCATCACCGCGTGCAACCATGAGGAAGCATTTGCGTTCACCTTTGATGACCGTGGGCATCAGGTGTACTACCTGACCTTCCCCGATGGGATGACCTGGGGGTTTGATATAGCAACCCGTGAATGGCATCGCCGCGAGTCCTTCGGGGTCAGTCGTTGGAGGATGAACGCCTGTGTACGGTGGGCCGCCCACTGGGTGGCTGGCGATTTTGCAAACGGCAAGTTGTATACCCTGGACTGGGGGATGCCGTGGGAACACGGCGAAGTGATTGAGCGCCGCCGTGTGAATGGCGTTCTGCACGACCATCAGAACCGCATGACCGTAGATGCCGTGGAGCTTGTGTTTGGGACAGATGCCCTTGGCGGCTACAAAGGGCCGGGCGATCTCACCCCCCCACAACCGGCAGGGCCTACGCTCAGCGGCAACGCACCAGATGCGGTGAACAAACAGGCGTACCGCTACGCCTACACCATGAAACCTGGTGCAACGCCCATTGTGGCAGTACGTGTAGTGAGCGGTGCGCTCCCCGAAGGGTTGAGCCTTGATCCTAAAGGCGTGTTGTCAGGCACCGTGGAGGTGGCGGGGCTGTTTGCCGGAGCCAAGCGCGCTTACCCCTTTACGATTCGCGTGACCGACGCGAACGGACTGTGGGCCTCCGTGAGCGACACGATGACAATCACGACCGCCGAGGTGATTTGCGGTACCTCCACGAGCTATAGCGGAGGGCAAGCGTTCCCGAACATCGTGCATGTGCAGCTTGGAAGCCAAACGGGACTTGTGACGCTCGCCTACGCCACCGCCGCCAACCCTGACAAGTTCCAGGTGTGGATCGGCGGGCAGAAGGTCATTGATACGGGCTACCACGGCGACACCAGTTATCAGGTGCAACTGGATGCGGACCTTAAAAACAGGGGGCTACCCCAAGAGACCATTACCCAGAGGCCGGGGGGCGAATCCACCCCCGAAGGCCAGTTCGCCGACAAAAACTACGAAACAGCCACGTTCCAAAAGACCACCGCCGATACGATCGCTGAGGTTCGGGTGTACTCACCGCTGGCGGGGACGGGGTGGCAATTCCACCTGGACTGCCCAACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
32ac5a1923984ce8ef1b07e30765ebc28fea04f0885e5c43539456b290cf8ff9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8513
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and biological analysis of phage Xfas53 and related prophages of Xylella fastidiosa Summer,E.J., Enderle,C.J., Ahern,S.J., Gill,J.J., Torres,C.P., Appel,D.N., Black,M.C., Young,R. and Gonzalez,C.F. 2010 19897657 GenBank