Protein

View in Explore
Genbank accession
QGZ13866.1 [GenBank]
Protein name
tail fiber protein host specificity
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MPIWTKVAGTWKKVLDPEVKKNGAWTPVKVVSVKVGGVWQQVFAIEVVAFISANSLNVSMQSLFTSPIWTNPLIKKRVVVNSGVIVGSTNPAVAALRTGTGWAGTLQLDNYGEIQGAGGAPNSGAGGHAILCEAAGLIIKNNWAIRGGGGAGGKGGNGGPGIYYTTITEGPFYSGYPGGTGTRYYWSTSPGSVDTVWWANAGLNLGDINSPHTRDGITWTRGIQRDSSESGGFTTNIFEIRRSYQSPNGTSGGAGGNGGRGKGYGQTNAAGSSGSAGGTNAGTGGTGGTGGDWASGGATGATGNSGNNGGGSAGTGGGAAGKAISGSNTLINTGVINGATS
Physico‐chemical
properties
protein length:341 AA
molecular weight: 33765,74820 Da
isoelectric point:9,68052
aromaticity:0,07918
hydropathy:-0,21642

Domains

Domains [InterPro]
DC_1762
ATT
1–170
DC_1762 DC_0422
IPR007932
RBD
48–163
IPR007932
QGZ13866.1
1 341
Architecture
ATT
RBD
ATT 1-170 | RBD 189-341
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RL38J1
[NCBI] 		2663232 Uroviricota > Caudoviricetes > Pootjesviridae > Innesvirus RL38J1 >
Host Rhizobium leguminosarum
[NCBI] 		384 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ13866.1 [NCBI]
Genbank nucleotide accession
MN549360.1 [NCBI]
CDS location
range 65971 -> 66996
strand +
CDS
ATGCCAATTTGGACAAAAGTAGCTGGAACTTGGAAGAAAGTTCTCGATCCTGAAGTCAAGAAGAATGGAGCATGGACTCCAGTCAAGGTCGTTTCTGTCAAGGTAGGAGGTGTCTGGCAACAGGTCTTCGCTATCGAAGTCGTGGCATTCATCTCGGCGAACTCGCTCAATGTTTCCATGCAGTCTCTCTTCACGTCTCCGATTTGGACGAATCCTCTAATCAAGAAGAGGGTCGTCGTCAATTCCGGTGTGATCGTCGGCAGTACGAATCCTGCAGTCGCTGCTCTTCGAACAGGAACAGGATGGGCTGGCACCCTTCAGCTCGACAACTACGGCGAGATCCAGGGTGCCGGCGGTGCTCCGAACTCTGGAGCCGGTGGACACGCAATTCTTTGCGAAGCTGCTGGACTCATTATCAAGAATAACTGGGCTATTCGAGGCGGCGGTGGCGCTGGCGGCAAAGGCGGTAACGGCGGTCCTGGTATCTACTACACGACTATCACTGAAGGTCCTTTCTATTCTGGCTATCCAGGCGGTACCGGCACGAGATACTACTGGTCGACTTCGCCAGGTTCAGTTGACACCGTCTGGTGGGCAAACGCCGGGTTAAACTTAGGCGACATCAACAGCCCTCATACGCGAGACGGCATTACGTGGACGCGCGGTATTCAACGAGATAGTTCTGAAAGCGGAGGCTTCACGACGAACATCTTCGAGATACGTCGATCCTATCAATCTCCGAATGGCACCTCTGGCGGTGCTGGTGGTAACGGCGGTCGAGGCAAAGGATACGGTCAGACGAACGCTGCTGGTTCTTCTGGATCTGCTGGTGGCACGAACGCCGGTACTGGTGGCACTGGCGGCACAGGCGGAGACTGGGCTTCTGGAGGTGCAACAGGTGCAACAGGCAATTCTGGCAACAACGGCGGTGGATCTGCTGGTACAGGCGGTGGAGCAGCCGGTAAGGCAATCTCTGGATCGAACACCCTTATCAATACGGGTGTGATCAACGGAGCGACTTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
913d945222327d1441d2715c0f013f34b9464df2ce7e268b167f79fe6db1465e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7952
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_RLeM_RL38JI Gunathilake,D., Bhat,S., Yost,C.K. and Hynes,M.F. 2022-09-15 — GenBank