Protein

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Genbank accession
YP_717889.1 [GenBank]
Protein name
major head protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSHPEIYYRPEGSFGPICDALVVLDDDLGRGALRLQDDDGDGPEDPDEDVFGPYEDGKVTQPVRRIVCKKNPDTGELYNCRVEYTPEGGDKWFPEPPCYFEIDGECYNFPEAAAKEFGLQDDFFVPPLNPETCLPFRNDLNIAPITRVREDGSTYKLYPVERSNPVTFPVTSGAVEGASLDVKFSDAGNSIVVRGDSTDSGTAVCTLSWDDDPTNNGTALGKISIPVTEVDTNSAPTTWTQSNIYDAASLPGASLTGVALLYFGNGIGEIGQFAPPDGNTSGTQYFAFGTPTTSPFSTQQTLRRVEFTADLTGSRTLFVHAISGNDRNGGERINNIGEGLRVIWPDNSEQVLLPSRQDWVADTGGSYSEYDDRYDNWSLLNVNIPEQYRTTGVSIKLQQNIVSGPEFQREDIQVYFNSAGDLVVDGNGDAEVTLKFAWDDNPNQHGVALGTWSANGVTFTQTTGIPEGNDTQTMNVVAGNVYSATITGNPGGFTVDSDDEGNTRQVLCFKDNDGDDCNATLEIHKVKKGVNTIVENNPNGGDALGVAAVGWGGAASFEQAERGSESHKFNVSANQTYPITFTDLNPANTTIKVRDDNTRLIFYDGAGTDTNAEFFIDSVENTVGSTAAGYWSDVGNRYAVWVNPAVCTLPCLTQTITYQITFPATDKYFFEFGCDDNAKVFFGEEEVPILDVAGGIFRSGALSTPYVVEKTVTAGTHTVVVVITNSNPRGNERTVDAVFIPYSAVRRAANNPDGYTDALGTFGLLDYTNPARYFSVISRSVAEEYITGRFGRTETITGQYVFRGRGPDKNGHLSHVNYYVSQGGSRSDTTLNATAWAATKQNIYDNYVSGGEINEGNVIRTYYPDCSTDSPVGKSGTDTNDWALDWGKNPGGYYMRICRGTPCSDGESLDWVKSGPHNAWGDFMDEYAVFASNFETYHGIPQTITYSIDIPVDGTYIIEYAADDNMQLDWDGTNIINHGGFTTSTTSTFNFTAGTHDLKMQVTNQANSANADNWDKNPAGGAWKITKQTPSINVVFNLDGGVDVLGVGKAAVTFDFEWDDNPNDDGKALNYWTIPGVKFSQGNATTGSASKTVVLEAGSYRPTIRGNTGGFVLQNNNSEIHFRDQDGTDTNAQISITSIEQIIRSSTDLDKAGENNLIWHTRQDVLYDYIEIGS
Physico‐chemical
properties
protein length:1174 AA
molecular weight: 127713,90750 Da
isoelectric point:4,34065
aromaticity:0,10562
hydropathy:-0,45903

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_717889.1
1 1174
Domain Start End Length (AA) Confidence
N-terminal 1 245 245 0,7560
Central domain 246 707 463 0,6499
C-terminal 708 1174 466 0,0648
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-245
Central
246-707
C-terminal
708-1174

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage syn9
[NCBI] 		382359 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 8012
[NCBI] 		166313 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_717889.1 [NCBI]
Genbank nucleotide accession
NC_008296 [NCBI]
CDS location
range 169019 -> 172543
strand +
CDS
ATGAGTCACCCTGAAATTTATTATAGACCTGAAGGAAGTTTTGGTCCTATCTGTGATGCACTTGTTGTCTTGGACGATGATCTTGGACGAGGTGCATTGCGTTTGCAGGATGACGATGGTGATGGACCTGAAGATCCTGATGAGGATGTATTTGGACCATATGAAGATGGTAAGGTTACTCAACCAGTCAGAAGAATTGTATGTAAGAAAAATCCTGATACGGGAGAGTTATATAATTGTCGTGTAGAATATACACCTGAAGGTGGGGACAAATGGTTTCCAGAACCACCATGCTACTTTGAAATTGATGGTGAATGCTATAATTTTCCCGAAGCAGCGGCAAAGGAATTTGGATTGCAAGATGATTTCTTTGTTCCTCCACTAAATCCAGAAACCTGTTTGCCATTTAGAAATGATCTAAACATTGCACCTATCACTAGGGTCCGTGAGGATGGATCGACATATAAACTATATCCTGTAGAAAGATCAAACCCTGTTACCTTTCCTGTCACCTCTGGGGCAGTAGAAGGAGCATCACTTGACGTTAAATTTAGTGATGCTGGCAATTCTATAGTTGTTAGAGGTGATAGCACTGACAGTGGCACTGCTGTTTGTACACTGAGTTGGGATGATGATCCAACTAACAATGGCACTGCACTTGGTAAAATTAGTATTCCTGTTACTGAAGTTGATACTAATAGTGCTCCTACAACATGGACACAAAGTAATATTTACGATGCTGCTTCTCTGCCTGGTGCATCGCTGACGGGTGTAGCACTACTTTACTTTGGTAATGGTATTGGTGAGATTGGTCAGTTTGCTCCACCAGACGGTAATACTTCTGGCACACAATACTTTGCTTTTGGCACACCTACTACGAGTCCATTCAGCACACAACAGACACTGAGAAGAGTTGAATTTACTGCTGATCTTACTGGATCTAGGACATTATTTGTCCATGCTATTTCTGGTAATGATAGAAATGGTGGTGAAAGAATTAATAATATTGGAGAGGGTCTGAGAGTTATTTGGCCTGACAATAGTGAGCAAGTTTTACTTCCATCTAGACAGGACTGGGTAGCAGATACTGGTGGAAGTTATTCAGAGTATGATGATAGGTATGATAATTGGTCTTTGCTCAATGTAAATATTCCTGAGCAGTATCGGACAACTGGTGTTTCTATTAAACTACAACAAAACATTGTATCTGGACCTGAGTTTCAGCGTGAAGACATTCAAGTTTACTTTAATTCTGCTGGCGATCTGGTTGTTGATGGTAACGGTGATGCTGAGGTGACACTTAAGTTTGCATGGGATGATAACCCAAACCAGCATGGTGTTGCTTTAGGCACATGGTCTGCAAATGGTGTTACATTCACACAAACTACAGGTATTCCTGAGGGCAATGACACACAGACAATGAATGTTGTTGCTGGTAATGTTTACAGTGCAACTATCACTGGAAACCCTGGTGGATTTACTGTTGATTCTGATGATGAAGGTAACACTAGACAGGTGCTTTGTTTCAAAGATAATGATGGTGATGATTGTAATGCCACCTTAGAAATTCACAAAGTAAAAAAAGGTGTTAATACTATTGTAGAAAACAATCCTAATGGTGGTGATGCTTTGGGTGTTGCTGCTGTTGGTTGGGGTGGTGCTGCATCTTTTGAGCAAGCAGAAAGAGGATCTGAGTCACATAAGTTTAATGTTTCTGCAAATCAAACATATCCTATTACTTTTACAGATCTGAATCCTGCTAACACAACTATTAAAGTTAGAGATGATAATACTAGATTGATTTTTTATGATGGTGCTGGTACAGATACCAACGCAGAGTTTTTTATTGACTCTGTAGAAAATACGGTGGGATCTACAGCAGCAGGATACTGGTCTGATGTTGGCAATAGATATGCAGTGTGGGTTAATCCTGCTGTCTGCACACTTCCTTGCTTGACTCAAACAATTACATATCAAATAACATTCCCTGCTACTGACAAATACTTCTTTGAGTTTGGATGTGATGATAATGCCAAAGTTTTCTTTGGAGAAGAAGAAGTGCCCATTCTAGATGTGGCGGGAGGTATTTTTAGAAGTGGTGCATTGTCAACTCCTTATGTTGTAGAGAAGACTGTAACTGCAGGGACGCACACAGTTGTTGTAGTTATCACTAATTCAAACCCTCGTGGTAATGAAAGGACTGTAGATGCAGTTTTTATCCCATATTCTGCTGTTAGGAGAGCGGCAAATAATCCTGATGGATATACTGATGCTTTAGGTACATTTGGGCTCTTAGATTATACAAATCCTGCTAGATATTTTAGTGTCATTAGTAGATCTGTTGCTGAAGAATATATTACAGGAAGGTTTGGACGCACAGAGACAATTACTGGACAGTATGTCTTTCGTGGTAGAGGACCAGATAAGAATGGTCACCTTTCACATGTAAATTATTATGTTTCTCAAGGTGGATCTAGGTCTGATACAACATTAAATGCTACTGCGTGGGCAGCAACAAAGCAAAACATCTATGATAATTATGTAAGCGGTGGTGAAATCAATGAAGGAAATGTCATCAGAACATATTATCCAGACTGCTCCACAGATAGTCCTGTTGGTAAATCGGGCACAGATACAAACGATTGGGCACTAGATTGGGGAAAGAATCCTGGTGGATACTATATGAGGATCTGTAGAGGAACACCATGTAGTGATGGTGAATCATTGGATTGGGTTAAGTCTGGTCCACATAATGCATGGGGTGATTTTATGGATGAGTATGCTGTATTCGCATCAAATTTTGAAACTTATCATGGCATTCCTCAAACTATCACTTATAGCATCGACATTCCCGTTGATGGCACTTATATTATTGAGTATGCTGCCGATGATAATATGCAACTAGATTGGGATGGGACTAATATTATCAACCACGGTGGATTTACTACTTCTACAACGAGCACTTTTAATTTCACTGCTGGTACTCATGATTTAAAAATGCAGGTGACAAACCAAGCCAATTCAGCTAATGCAGATAACTGGGATAAGAATCCTGCAGGCGGTGCTTGGAAAATCACAAAGCAAACACCATCTATCAATGTAGTTTTTAATTTAGATGGTGGTGTTGATGTCCTTGGTGTAGGAAAAGCAGCAGTTACTTTTGATTTTGAATGGGATGATAATCCAAACGACGATGGTAAGGCACTTAACTATTGGACTATTCCTGGAGTTAAATTTTCTCAGGGTAATGCAACTACTGGTAGTGCTTCAAAGACTGTTGTGTTGGAAGCAGGATCATACCGTCCAACTATTAGAGGAAACACTGGAGGATTTGTCCTTCAAAATAATAACTCTGAAATACATTTCCGAGATCAAGATGGCACAGATACTAATGCACAAATAAGTATTACTAGTATTGAGCAGATTATCAGATCCTCAACAGACCTTGACAAAGCAGGGGAGAATAATCTAATATGGCACACAAGGCAGGACGTACTCTATGACTACATTGAAATCGGATCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
63a1e5be8578b30dacf0b210a4da7c454acb3dd119a3b190a712c00ef741d9ce
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2850
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage Syn9 Hendrix,R.W., Pedulla,M.L., Peebles,C.L., Pope,W., Houtz,J.M., Smith,A.L., Hatfull,G.F. and King,J.A. 2003-10 — GenBank