Protein

View in Explore
Genbank accession
YP_010669439.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,53
Protein sequence
MAANTNNYTQIKGKFGGCVGSIQVHATPYIQGSNDPNTDTFKQHIPAGYLKCDGSIQNKSEYYALGEVLGVGDESKFKKENVTLRQENTETGELGQFQLPDLGSKVLIPNRSVGQYFNDLTEQDGSNRVGPEVEVFSNEGNSLRCDFVGNFIGNPIQTNYDFNSNPKYVFETISSETTLDIENFQGHAHNVTGVGYVNYSAQHQTGGDGKDGGNFSGNSGAGNILEISDVNSTILSTHSHKITKPVTYTHNFQYQHSTFDIPADGVYTTLNIGVEDIKKLDNVSTPFIIVSYIIKF
Physico‐chemical
properties
protein length:296 AA
molecular weight: 32393,15470 Da
isoelectric point:5,03493
aromaticity:0,10135
hydropathy:-0,51486

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010669439.1
1 296
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,7379
Central domain 11 207 198 0,0018
C-terminal 208 296 88 0,9726
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-207
C-terminal
208-296

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H9-2
[NCBI] 		2783669 Uroviricota > Caudoviricetes > Pantevenvirales > Yushanluvirus > Yushanluvirus satich
Host Synechococcus sp. WH 8102
[NCBI] 		84588 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669439.1 [NCBI]
Genbank nucleotide accession
NC_070960 [NCBI]
CDS location
range 167882 -> 168772
strand +
CDS
ATGGCAGCAAATACCAATAACTACACTCAAATCAAAGGAAAGTTTGGTGGATGCGTAGGGTCCATTCAAGTTCATGCGACTCCGTATATTCAAGGATCTAATGATCCAAACACAGACACATTTAAACAGCACATTCCTGCTGGTTATTTAAAATGTGACGGATCTATTCAGAATAAAAGTGAATACTATGCATTAGGTGAAGTTCTTGGTGTTGGTGATGAAAGTAAGTTCAAAAAAGAAAATGTAACTCTTAGGCAAGAAAATACTGAAACGGGAGAACTTGGGCAGTTTCAACTCCCCGACTTAGGATCTAAAGTATTAATTCCCAACAGATCAGTTGGGCAGTATTTTAATGACCTAACAGAACAGGATGGTTCTAATAGAGTTGGACCAGAAGTTGAAGTTTTTAGTAATGAAGGAAACTCTCTTCGATGTGATTTTGTAGGAAATTTTATCGGTAATCCAATTCAAACAAATTACGATTTTAACTCCAACCCAAAATATGTGTTTGAGACAATTTCTTCAGAAACAACCTTGGACATTGAAAACTTTCAGGGTCATGCTCACAATGTTACTGGTGTTGGATATGTAAACTATTCTGCACAACACCAGACAGGCGGTGATGGTAAAGATGGTGGAAATTTTAGCGGAAACTCTGGTGCAGGAAACATTCTTGAAATTTCAGACGTTAACTCTACAATTCTATCTACTCACTCTCATAAAATTACAAAACCAGTAACTTATACTCACAACTTCCAATATCAACATTCTACATTTGATATTCCTGCCGATGGTGTATATACCACTTTGAATATTGGAGTTGAAGATATTAAAAAATTAGACAACGTATCGACTCCATTTATTATTGTAAGTTACATTATTAAGTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6cf618523b82199664cb1befee58b3221284e6e0537165d39a6b4111a5c9b4ad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4982
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H9-2 from the Yellow Sea, China Jiang,T. and Luo,L. 2019-04-04 — GenBank