Protein

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Genbank accession
YP_009819265.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,60
Protein sequence
MSQALEGSVPSLLQGVSQQVPRERLQGQVTAMVNCLADPVSGVRRRPSAKVITHKAWHLPKADELQYLYTRYLEDGEGGTHLCINTKTGNWWLLDDDLSTEINSGIEPYLIDTVQGKHSIQTTSIGGTTYILNTSIKPEKVVDNTGKIDPSTCGWFFVKSGAFSKRYTVTVASGGTTEEVTYETPKGTETGDAQKATPEYISTQIKTKLEAKGFTVYQDGTYLFITNLVNAQVESDAGSTYVGTSGRGRVQLESDLPARLPSQAEGYLCSVGLRSTALVWYKYNVADRKWDEAGAYNSATGITGMPLELKLDGTMSAPQYEGRLAGDDETNEDPTFLKDGRITGISTFQGRLVLLSGAYVCMSKAGSPRRFYRGTVTQLLDADRIDIASGSAQNSVFRSAVQFNRDLIIFGDSMQAVVPTGNTLLSPVNASLVLTSELSCDSRIPAVPAGQTMLYFTRRTEDFAGALELIPSQYAGSQYISQDATVHIPKYMAGRVYNASTSTVGNMVVVGCTKNLDSVTVYEYQWGADEKLQGAWHTWQFSLPLQGFHFAREKLVLFVDFGSTTGVCTVDPREGYKSTEFTLDPIADYQYNVQVQQGTFSVPDKLKYVYESGYSLVLARGTGTGDYGEEVGIEGINGNTGTVVRGVPDGEYILGARFRSILAPTPPMLRDDNNKVIGAGKVRLLRYSVTLQYSSEFKVHVLDVSRDVDRQGLYTGMILNSPELNPDDSLLYSLGSVIVPCRTNADTTEMFLISDSTREMNVLDVSYILKYNIRHRRV
Physico‐chemical
properties
protein length:778 AA
molecular weight: 85338,98380 Da
isoelectric point:5,34329
aromaticity:0,09126
hydropathy:-0,26015

Domains

Domains [InterPro]
DC_0058
STR
1–778
DC_0058
IPR058003
TTP
4–778
IPR058003
YP_009819265.1
1 778
Architecture
STR
STR 1-778
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009819265.1
1 778
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,9931
Central domain 149 347 200 0,0975
C-terminal 348 778 430 0,1896
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-347
C-terminal
348-778

Taxonomy

  Name Taxonomy ID Lineage
Phage Providencia phage vB_PstP_PS3
[NCBI] 		2848038 Uroviricota > Caudoviricetes > Autographivirales > Slopekvirinae > Kakivirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009819265.1 [NCBI]
Genbank nucleotide accession
NC_048148 [NCBI]
CDS location
range 24225 -> 26561
strand +
CDS
ATGTCACAAGCACTAGAGGGTTCAGTCCCTTCCCTATTACAAGGGGTATCACAGCAAGTCCCTAGGGAGCGTCTACAAGGGCAAGTCACAGCTATGGTTAACTGTTTAGCTGACCCTGTCTCTGGTGTGCGTAGACGTCCCTCAGCTAAGGTAATCACCCATAAAGCATGGCACCTACCTAAAGCAGATGAATTGCAGTACCTTTATACTCGCTACCTAGAGGATGGTGAAGGTGGTACTCATTTATGTATTAACACTAAGACAGGTAACTGGTGGTTACTGGATGATGATTTAAGTACAGAGATTAACTCTGGTATTGAGCCGTACTTGATTGATACAGTACAAGGTAAACACAGCATTCAGACTACCAGTATAGGCGGTACAACGTACATCCTAAATACTAGTATAAAACCAGAGAAGGTTGTAGATAACACTGGTAAGATTGACCCTAGTACCTGTGGTTGGTTCTTTGTTAAGTCAGGCGCATTCAGCAAGAGATACACTGTTACCGTCGCATCTGGTGGTACAACAGAAGAAGTTACTTATGAAACTCCTAAAGGTACAGAGACAGGGGATGCTCAAAAGGCTACACCTGAGTACATTAGTACACAGATTAAAACTAAACTAGAAGCTAAGGGCTTCACTGTGTACCAAGATGGTACGTACCTGTTCATTACCAACCTAGTGAATGCACAGGTTGAATCAGATGCAGGGAGTACTTACGTAGGTACTTCTGGTAGGGGTAGGGTTCAGCTAGAGTCTGACTTACCTGCACGTTTACCATCTCAAGCTGAGGGGTACTTATGTTCAGTAGGTCTCCGTAGTACCGCCTTAGTGTGGTACAAGTACAATGTAGCTGATAGAAAGTGGGATGAAGCGGGAGCATACAACTCGGCTACAGGTATCACTGGTATGCCATTAGAGCTTAAACTGGATGGTACTATGTCAGCCCCACAGTACGAAGGTAGATTAGCTGGGGACGATGAAACCAACGAAGACCCTACCTTCCTAAAGGATGGGCGTATCACAGGTATTAGTACCTTTCAAGGTAGGTTGGTTCTATTATCTGGTGCTTATGTTTGTATGAGTAAAGCAGGCTCCCCACGTAGATTCTACCGAGGTACAGTCACTCAATTACTTGATGCCGACAGAATTGATATAGCATCTGGTTCAGCACAGAACAGTGTATTCAGGAGTGCGGTACAGTTCAACCGAGATTTAATTATCTTTGGCGATTCTATGCAAGCTGTAGTCCCTACTGGTAATACCCTACTAAGTCCAGTTAACGCCAGCCTTGTACTAACGTCAGAACTATCTTGCGATTCTAGAATCCCTGCTGTTCCTGCTGGGCAAACTATGCTGTACTTCACACGTAGGACTGAGGACTTTGCTGGGGCACTAGAGCTTATTCCATCTCAGTACGCTGGCTCTCAGTACATATCACAGGATGCTACTGTGCATATCCCTAAGTACATGGCTGGTAGGGTGTACAACGCTAGTACCAGTACCGTAGGTAACATGGTGGTTGTAGGATGCACTAAGAACCTAGATTCAGTTACTGTGTACGAGTACCAATGGGGAGCCGATGAGAAACTACAAGGTGCGTGGCATACTTGGCAGTTCTCTTTACCATTACAAGGTTTCCACTTTGCTAGGGAAAAGTTGGTGCTGTTCGTGGACTTTGGTAGTACCACTGGGGTTTGTACAGTTGACCCTAGAGAGGGTTACAAGAGCACGGAGTTCACCCTAGACCCTATAGCTGATTACCAGTACAATGTTCAAGTACAACAGGGTACTTTCAGTGTGCCTGATAAGTTAAAGTACGTGTATGAATCAGGGTACAGTCTGGTACTGGCACGAGGTACAGGTACTGGTGATTACGGTGAGGAAGTAGGTATAGAGGGTATCAATGGAAATACAGGCACAGTGGTACGCGGTGTACCGGATGGGGAGTACATACTAGGGGCTAGGTTTAGAAGCATCTTAGCACCAACTCCACCTATGCTCCGTGATGATAACAACAAGGTAATAGGGGCAGGTAAAGTACGTTTACTCCGGTACAGTGTAACCCTACAGTACAGCTCCGAGTTCAAGGTGCATGTACTAGATGTGAGCAGAGATGTGGACAGGCAGGGATTATACACAGGGATGATTCTAAATAGCCCAGAGCTTAATCCTGATGATTCCTTACTGTACTCACTGGGTAGTGTTATAGTACCTTGTAGGACTAATGCTGATACAACTGAGATGTTCTTAATCAGCGATAGCACTAGAGAGATGAACGTACTAGATGTATCTTATATCTTGAAATACAATATAAGACACAGGAGAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bbcf900283b1b494dabfd8c6961a4ef26749aba84ea0fb2a7a1e7efb9a1eec0e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3190
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
PS3, a novel KP34virus infecting Providencia stuartii with a tail spike-associated depolymerase that enhances serum-mediated killing Oliveira,H., Mendes,B., Lobocka,M. and Azeredo,J. 2020-06-17 — GenBank