Protein

View in Explore
Genbank accession
YP_009126190.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence RBPdetect
Probability 0,84
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MATIKQIQFKRTKVAGSRPTAAQLAEGELAINLKDRTIFTKDDLNQIIDLGFAKGGEVSGDITQIGNYTQTGNYNLTGDATISGKTTTSTLDVGSVSDLRQTNFRPVLSTTTGSNFIISNSGGLIKPITLTVEGTATSSNTILRHSVDTTVAASGFIDSINVSLNPTDGALVTALNGTVNIGSSLKTPKLSVSGAETALGDYSISIGDNDTGFKWNSDGVFSLVTDSNSIYTYSRDRTYSNRPTNFRYTSDFDATTPALAPPGTWLASVETAIDGNAYGDGMSYLGYKDAAGYSFYFRGGGTFNVASKGGFNVDTAAAFAKTVDVSDILTCSSIIKAKGPGQVDVTSAGNIALGGTIQWVPSYMSGSPNRARDTIATAAWGDADQRINVLETSDPHGWWYYIQRAGSGSSSPTGIEGRVNGSWQASDLISDNTLRVAGAFTCTRRNSAGWGDNAGWYAGATPVVANQGNIQEMDPGVGSFYPGFAQYNYNGTGWNQAFVLGLLGQGVQRWRRGVLALRGDGPVDAGQQIARWYFSQEDGSLESEGPLKAPSVQAGQITSFGVNVTNALGSASITIGDNDTGLLWGGDGVIKLMANHAHVATWDAGSFYTAAGKGLSSNGAMWCRDNLDVNDVYIRSDIRAKSNIKLIENAQEKSKKLGGYTYLLKNTESGEIKPSAGLIAQEVQDVLPELVTKDKDTGYLRLNYNGIIGLNTATINEHTDEINSLKSEIAELKALIKSLM
Physico‐chemical
properties
protein length:740 AA
molecular weight: 78387,95440 Da
isoelectric point:5,12741
aromaticity:0,08514
hydropathy:-0,24703

Domains

Domains [InterPro]
DC_0000
STR
1–740
DC_0000
IPR030392
CHP
636–692
IPR030392 Coil
IPR030392
CHP
636–729
IPR030392
YP_009126190.1
1 740
Architecture
STR
STR 1-740
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage STP4-a
[NCBI] 		1445860 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gelderlandvirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009126190.1 [NCBI]
Genbank nucleotide accession
NC_026607 [NCBI]
CDS location
range 148846 -> 151068
strand +
CDS
ATGGCTACTATAAAACAAATACAATTTAAAAGAACTAAAGTAGCAGGCTCTCGTCCTACTGCCGCTCAACTCGCTGAAGGCGAACTTGCTATTAACTTAAAAGACCGTACTATTTTCACGAAAGATGATTTAAACCAAATCATTGATTTAGGTTTTGCAAAAGGCGGTGAAGTATCAGGAGATATCACGCAGATTGGTAATTATACCCAAACTGGGAACTATAATTTAACCGGCGATGCTACTATATCAGGCAAAACTACTACAAGCACACTGGATGTTGGGTCTGTTTCAGATCTAAGACAGACAAACTTTAGACCAGTATTAAGCACAACAACTGGTTCTAATTTTATTATATCAAACTCTGGCGGCTTGATTAAACCAATTACTTTGACGGTAGAAGGCACAGCTACAAGTTCAAACACTATTCTGCGCCATTCAGTTGATACTACTGTAGCAGCTTCTGGATTTATCGATTCAATTAATGTTTCTTTAAATCCGACGGACGGCGCTCTTGTTACAGCTCTCAATGGTACTGTGAATATCGGTAGTTCCCTTAAAACTCCTAAACTTTCAGTTTCTGGCGCGGAAACTGCTTTGGGAGATTATAGTATTTCAATCGGTGATAATGATACAGGATTTAAATGGAATTCTGATGGTGTATTCAGCTTAGTTACTGACAGTAATTCAATTTATACATACTCTCGTGATAGGACATATTCTAACCGTCCAACAAATTTCCGGTATACGTCTGACTTTGATGCTACGACACCTGCTTTAGCTCCGCCAGGCACATGGTTAGCTTCAGTTGAAACTGCAATAGACGGTAACGCTTACGGCGATGGAATGAGCTATCTCGGTTATAAAGATGCCGCAGGTTATAGTTTTTATTTCCGCGGCGGCGGCACTTTTAACGTAGCTTCTAAAGGTGGATTTAATGTAGACACAGCTGCGGCTTTTGCCAAAACGGTTGATGTATCTGATATTCTAACATGCAGCTCTATTATTAAAGCTAAAGGCCCAGGTCAAGTTGATGTTACTAGTGCTGGTAATATCGCACTTGGTGGAACTATTCAATGGGTGCCTTCGTATATGAGCGGAAGCCCAAATAGAGCACGAGATACAATAGCTACAGCAGCTTGGGGCGATGCCGACCAACGAATTAACGTATTAGAAACATCTGACCCGCATGGTTGGTGGTATTATATACAGCGCGCAGGTTCTGGAAGTTCTTCTCCTACGGGAATAGAAGGGCGAGTCAATGGCTCTTGGCAGGCATCTGATTTAATTTCTGATAATACTCTAAGAGTAGCTGGAGCTTTCACTTGTACTAGAAGAAACTCTGCAGGCTGGGGTGATAACGCTGGATGGTATGCTGGAGCAACACCAGTAGTAGCTAACCAAGGAAACATTCAAGAAATGGACCCCGGTGTAGGCAGTTTTTATCCTGGATTTGCTCAATATAACTATAATGGCACTGGATGGAACCAAGCATTTGTTCTGGGGTTACTAGGCCAAGGTGTTCAGAGATGGCGGCGTGGTGTATTAGCTCTTAGAGGCGATGGTCCTGTTGATGCTGGGCAACAAATTGCTCGTTGGTATTTTAGTCAAGAAGACGGAAGTTTGGAATCAGAAGGTCCGCTTAAAGCTCCTAGTGTTCAAGCTGGACAAATAACATCTTTTGGTGTAAACGTTACAAACGCGTTAGGTAGTGCGTCTATAACCATTGGCGATAACGATACTGGATTGCTTTGGGGCGGCGATGGTGTAATAAAACTTATGGCAAACCACGCTCATGTTGCAACATGGGATGCGGGTTCATTTTACACAGCAGCGGGAAAAGGGCTTTCATCTAACGGAGCAATGTGGTGCCGCGATAACTTAGACGTCAATGATGTTTATATTCGTTCTGACATTAGAGCTAAATCAAATATCAAACTGATTGAAAATGCTCAAGAAAAATCTAAGAAATTAGGCGGTTACACTTATCTGCTGAAAAACACTGAATCTGGTGAAATAAAACCTTCTGCTGGATTGATAGCTCAAGAAGTTCAAGATGTTTTACCTGAGTTGGTCACTAAAGACAAAGACACTGGGTATTTGCGTCTGAACTATAACGGTATTATTGGTTTAAATACTGCTACAATCAACGAACATACAGATGAAATTAATTCACTTAAATCTGAAATCGCTGAACTTAAAGCACTTATTAAATCATTAATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8129e60a5784876a576e67f6a6acbcfb0cbcdb4468f9387f9c45b4b44de0d4a2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5504
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of STP4-a, a novel T4 virulent phage infecting Salmonella Li,M., Wang,J., Lin,H. and Han,F. 2015-11-13 — GenBank