Protein

View in Explore
Genbank accession
QZI86353.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPLVLDPIQSGYNLSKINDNFQRIEDAWDEKLDRVNSGSFYNQMDQTLDMNSNEIINVKVGDTDDSLVNKGYVDQQDELRVLKAGDSMSGQLNTIDPVQPSNATNKRYVDGMIATIDGVEGIVPLVSPRQQGDGVTTVFPTIVTSQHPTQSYSVNLDGVTQRPQTDFTADTNGNVVFAEAPEVGVDIDITVFEPVNLQEAADLSQVTATGSTTPRTLADRFAGTANVVDFGAVGDGVADDTSAINLASASGKSVVFPKGRYRCTGKLTTSVSWEFLDGASIVIAEPVANMIEIVPEYTKTILGQGDVVIGDFVKYANKLSNLDDYPNHFMVVDSTQLDFNRNRASMQTYTKNSVTLLGENGVLAYPLTTTFNSISRIELSPTNIKRAIFKNLTVELDGAPTTPENMISVTRNCVDFHNTRYVDKTTNSGQIDLQSFVSISYAFDVTFDKITCDALSEGRLDFNYTILTWKSAKIRIKELRSFDGWAQLDGNHTRDVVVRDSTIDRIGGHYAYWDCTFDNITANQSRCIDVSGGGRLDVRNLNIRVNPDFLSGNELYAVAIRGDYAAEWDGDVLVDGVTVDARSIKGELTSETIFNIFSSFADSSSAGFNYGRPTTVAKTVTVRAVRFYCSEDSGAKWVLRACALGYVGAPVSDAQYTESVTVEDVAIVTKDTSFYHQIRALDWFGDVKPATIAQTTSINIKGVNNNDPAFAGQSPSSGLIDQVPTLSILNQDRNSIDVAVSDCNWLKIHSNGHPASPTKIDVVNSRLYYVGGDFDNRMTFNGCNWADTRFEGSWKGTVNSGWFEDYEKSGGGFGNIGFPNNIETNLSGVANVLLGANTTMTTSVHDSYTIYEGTTDGTYWQDTVRPIPNPTFRSGANNPTGVVTPLYLGEEYLDTSPGQFNFYKATGLAISNWKQITA
Physico‐chemical
properties
protein length:918 AA
molecular weight: 100263,95630 Da
isoelectric point:4,57585
aromaticity:0,09368
hydropathy:-0,27364

Domains

Domains [InterPro]
DC_2003
STR
1–546
DC_2003
IPR011050
STR
222–544
IPR011050
IPR012334
STR
225–599
IPR012334
IPR024535
ENZ
226–270
IPR024535 DC_1090
QZI86353.1
1 918
Architecture
STR
RBD
STR 1-599 | RBD 600-917 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QZI86353.1
1 918
Domain Start End Length (AA) Confidence
N-terminal 1 241 241 0,9932
Central domain 242 835 595 0,9674
C-terminal 836 918 82 0,9053
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-241
Central
242-835
C-terminal
836-918

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PS32B.3
[NCBI] 		2859296 No lineage information
Host Vibrio crassostreae
[NCBI] 		246167 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QZI86353.1 [NCBI]
Genbank nucleotide accession
MW865301.1 [NCBI]
CDS location
range 1692 -> 4448
strand -
CDS
ATGCCATTAGTATTAGATCCGATTCAATCGGGTTATAACTTGTCAAAGATAAATGACAACTTCCAGCGTATTGAAGATGCGTGGGATGAGAAATTAGATAGAGTGAACTCTGGTAGTTTTTACAACCAGATGGATCAAACGTTAGATATGAACTCTAACGAAATTATTAATGTTAAAGTAGGTGACACTGACGATAGTCTTGTTAATAAAGGTTATGTAGACCAACAAGATGAGTTACGCGTACTGAAAGCTGGTGACAGCATGTCAGGTCAATTAAATACTATTGATCCTGTACAGCCGAGTAACGCAACTAACAAACGCTATGTGGATGGCATGATTGCTACTATTGATGGCGTTGAGGGTATTGTGCCTCTTGTATCTCCGCGTCAACAAGGCGATGGTGTAACAACTGTATTTCCTACTATCGTAACAAGTCAACACCCTACACAGTCTTATTCAGTGAATCTAGACGGTGTTACTCAGCGTCCTCAAACAGATTTCACTGCTGACACTAACGGTAATGTTGTATTCGCTGAAGCTCCTGAAGTAGGCGTGGATATTGACATCACTGTGTTCGAACCTGTTAACCTTCAAGAAGCAGCTGACCTGTCCCAAGTGACAGCTACAGGTTCTACTACTCCGCGTACGCTAGCTGATCGTTTTGCTGGCACAGCTAATGTAGTAGATTTTGGAGCGGTGGGTGATGGAGTCGCTGATGATACTTCAGCAATAAATCTAGCGTCTGCATCTGGGAAATCAGTAGTATTTCCTAAAGGTAGATACCGTTGTACAGGCAAGCTTACAACATCTGTTTCATGGGAATTCCTAGATGGAGCTTCGATTGTTATTGCAGAACCTGTAGCCAATATGATTGAAATCGTTCCTGAGTATACCAAGACAATTTTAGGGCAAGGTGATGTGGTAATCGGAGACTTTGTTAAGTATGCTAACAAGCTTTCTAACCTAGATGACTATCCTAACCATTTTATGGTTGTAGACTCAACGCAGTTAGATTTCAACAGAAACCGTGCAAGTATGCAGACTTATACAAAAAACTCTGTAACTCTTTTAGGTGAAAACGGTGTATTGGCATACCCTCTTACAACAACTTTTAATTCTATTTCAAGAATCGAATTATCACCTACAAATATAAAAAGAGCCATCTTTAAAAACTTGACTGTAGAGTTGGACGGTGCCCCAACCACCCCTGAGAATATGATCTCGGTAACACGTAACTGCGTAGACTTCCACAATACGCGATACGTAGACAAAACTACTAACTCAGGTCAAATAGATTTACAGTCATTCGTTTCAATATCTTATGCATTCGATGTCACTTTTGATAAGATAACGTGCGACGCTTTATCAGAAGGAAGGTTGGATTTTAACTATACGATATTGACATGGAAATCAGCTAAGATACGTATAAAGGAGTTACGTTCTTTTGACGGCTGGGCTCAGCTAGACGGCAACCATACTCGTGATGTTGTAGTCAGAGACTCCACTATTGACAGGATAGGCGGACATTATGCGTATTGGGATTGCACCTTCGACAATATAACAGCTAACCAGTCCAGATGTATTGATGTCAGCGGAGGAGGTCGACTAGATGTTCGAAACTTGAATATCAGAGTGAACCCTGATTTCCTTTCAGGGAATGAACTCTATGCTGTAGCTATACGCGGTGACTATGCAGCAGAGTGGGATGGAGATGTACTGGTTGATGGTGTAACAGTAGACGCTCGTTCCATCAAAGGCGAGTTGACTTCAGAGACGATCTTCAATATCTTTTCCAGTTTTGCAGATTCTTCAAGTGCAGGTTTTAACTATGGAAGACCCACTACAGTAGCTAAGACAGTTACAGTACGAGCGGTACGTTTCTACTGTAGCGAAGATTCCGGTGCAAAATGGGTACTTCGCGCCTGTGCGCTAGGCTACGTAGGAGCTCCTGTTTCTGACGCGCAGTATACTGAAAGTGTGACTGTTGAAGACGTAGCTATCGTTACAAAGGATACATCCTTCTACCATCAGATCAGGGCTCTGGATTGGTTTGGCGATGTTAAGCCAGCTACAATTGCACAGACTACCAGTATTAACATCAAAGGTGTTAATAATAACGACCCTGCATTTGCAGGGCAATCTCCTAGTTCTGGATTGATTGACCAAGTACCGACCCTATCTATTCTTAACCAAGATCGTAACAGTATAGATGTGGCAGTGTCCGACTGCAATTGGCTGAAGATCCACTCTAATGGGCATCCTGCTTCACCCACTAAGATAGATGTTGTAAATTCAAGACTGTATTACGTAGGAGGGGATTTTGACAACAGGATGACTTTCAATGGCTGCAACTGGGCAGATACTCGATTTGAAGGTTCTTGGAAAGGTACTGTTAATAGCGGATGGTTCGAAGACTATGAAAAATCTGGAGGAGGTTTCGGCAATATTGGTTTCCCTAACAATATCGAAACGAACCTATCAGGGGTAGCCAATGTACTGCTTGGGGCAAACACCACTATGACTACCAGCGTACACGATTCATATACTATATATGAGGGCACAACCGATGGGACTTATTGGCAGGACACTGTTCGCCCAATTCCTAATCCAACTTTTAGATCAGGAGCTAATAACCCTACAGGGGTAGTGACTCCACTGTACCTTGGGGAAGAGTACCTAGATACTTCCCCTGGTCAGTTTAACTTCTATAAAGCTACAGGTCTCGCAATATCCAATTGGAAACAGATTACAGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
06acff41e16e4d06744388d20d592eeda21d853f5d236c639bac2a910c01394c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2928
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Rapid evolution of virus immunity in the wild Piel,D., Bruto,M., Labreuche,Y., Blanquart,F., Chenivesse,S., Lepanse,S., James,A., Garcia Cruz,R., Dubert,J., Petton,B., Lieberman,E., Wegner,M.K., Hussain,F.A., Kauffman,K.K., Polz,M.F., Gandon,S., Bikard,D. and Le Roux,F. 2024-02-09 — GenBank