Protein

View in Explore
Genbank accession
XMN72258.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MLNDFNQPKGSTIGVLRDGRTIQEAFDEIPVISVLRFGAKGDGVADDYPAFQKAALEAQRIGGAVIDVPTPLVEYKIGFPVFLFDRTWFRGTGINCRVNFTDPLYARKSRSGFIIGSGYEQNRDKAIQCLNDGTWATTGSVVNSAFTELPRGQYVRDNPSQVQSRLCRVSDMYLVATYPNGTTLKGGYAVSGANAVDSDVFNIWGEGWTEIINFGSDVPPATPSCHNMHAYDITCVEPNHYETYYSAGFMANSTNCSIGRFRQLKPIADGSPHGSGGSMNYTEFCSFYAIDIPSLGRTASSEGILVNNSKGAVTRNIRIGNAKTCVAEYYTTGAGIFYDQAHPNVFDGIHANNCDNAVALRSKFSVWKNVTQTNCTYHVYFGTTNAQSCVVKFVPDSIGFGSGVDGLARLRDNRVNGYIERSVYVRPINFLLEDKTVLQSWDTNRNMKAKPDVGFRVLYPIPVNMRAIVSVNQFFTFEVGAGSKGSNVDIKVRRMASFGGNANEQPVIEFSNSKTATVDTVQDANVQANAPALVLTGTPDMPNSMDVLITVSNPTLNMNLKEFRLVYLGD
Physico‐chemical
properties
protein length:570 AA
molecular weight: 62369,39330 Da
isoelectric point:6,41442
aromaticity:0,10526
hydropathy:-0,21140

Domains

Domains [InterPro]
DC_0953
STR
1–473
DC_0953
IPR012334
STR
5–177
IPR012334
IPR011050
STR
30–378
IPR011050
XMN72258.1
1 570
Architecture
STR
STR 1-473 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMN72258.1
1 570
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,9598
Central domain 44 427 385 0,9913
C-terminal 428 570 142 0,9648
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-427
C-terminal
428-570

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnP_JYSS5
[NCBI] 		3385026 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMN72258.1 [NCBI]
Genbank nucleotide accession
PQ589213 [NCBI]
CDS location
range 17111 -> 18823
strand +
CDS
ATGCTGAACGACTTCAACCAGCCGAAAGGCTCAACCATTGGTGTGCTCAGGGATGGGCGCACTATCCAAGAGGCATTCGATGAGATTCCGGTAATATCAGTGCTACGTTTCGGGGCAAAGGGGGACGGGGTAGCCGACGACTATCCGGCTTTCCAGAAGGCAGCGCTTGAGGCTCAGCGGATTGGAGGGGCGGTAATCGACGTCCCGACTCCACTGGTGGAGTACAAGATTGGGTTCCCTGTGTTCTTGTTTGACCGAACTTGGTTCCGTGGCACAGGCATTAACTGCCGCGTGAACTTTACGGACCCGTTGTATGCCCGCAAGAGCCGTAGTGGGTTCATCATTGGCAGTGGCTACGAGCAGAACCGAGACAAGGCCATTCAGTGCCTTAACGATGGCACATGGGCCACGACTGGGTCTGTGGTAAACTCAGCGTTCACTGAGCTTCCTCGTGGTCAGTATGTGCGAGACAACCCGTCACAGGTCCAGAGTAGACTGTGTCGTGTTTCTGATATGTACCTAGTCGCAACGTACCCTAACGGAACTACCCTGAAAGGTGGCTATGCGGTGTCTGGTGCCAACGCTGTGGACAGCGATGTGTTCAACATTTGGGGCGAGGGCTGGACCGAGATTATCAACTTTGGTTCTGACGTTCCGCCAGCTACTCCAAGCTGTCACAACATGCACGCCTACGATATCACGTGTGTCGAGCCTAACCATTACGAGACGTACTATAGTGCAGGGTTTATGGCCAACTCCACGAACTGCTCCATCGGTCGATTCCGTCAGTTAAAACCTATCGCTGATGGTTCACCCCACGGTTCTGGCGGCTCAATGAACTACACTGAGTTCTGCTCGTTCTATGCCATTGACATCCCGAGCCTTGGCCGTACAGCCTCCTCTGAGGGCATCCTTGTCAACAACTCGAAAGGAGCGGTCACCCGTAATATTCGCATTGGTAACGCTAAGACCTGTGTGGCCGAGTATTACACCACTGGGGCTGGTATCTTCTACGACCAAGCTCACCCGAACGTCTTTGATGGAATCCACGCGAACAACTGCGACAACGCTGTGGCGCTGCGCTCTAAGTTCTCCGTATGGAAGAACGTTACGCAGACCAATTGTACGTACCATGTGTACTTCGGTACGACTAACGCCCAGTCGTGCGTCGTCAAATTCGTCCCTGACTCCATCGGGTTCGGCTCTGGTGTCGACGGTCTGGCCCGACTCCGCGATAACCGTGTTAATGGTTACATCGAGCGCTCCGTGTATGTCCGTCCGATTAACTTCCTATTGGAAGACAAGACGGTGCTCCAGAGCTGGGACACCAACAGGAACATGAAGGCTAAGCCTGACGTCGGTTTCCGTGTGCTGTATCCTATTCCGGTTAACATGCGGGCCATTGTCAGTGTAAACCAGTTCTTCACGTTTGAGGTGGGTGCCGGGTCAAAAGGCTCTAACGTAGACATTAAGGTGCGCCGTATGGCATCCTTTGGTGGTAACGCCAATGAGCAGCCAGTCATTGAGTTCTCTAACTCTAAGACTGCTACAGTGGACACCGTACAGGATGCTAACGTACAGGCCAACGCACCTGCGCTCGTCCTCACTGGGACCCCTGACATGCCCAACTCTATGGATGTCCTCATTACGGTGAGCAACCCGACCCTCAACATGAACCTCAAGGAGTTCCGACTGGTCTACCTTGGGGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bfde77241c701921f9d7ed04ad2b5739de0ae2019e1ebcf55e85095ea5c638fc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6860
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50