Protein

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Genbank accession
UPW35735.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGADDADKAVLWPIEDGGDGNYYVWRGSLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFSNNETVNFGGKTLTIDCKAKFIGDGNLVFTQLGKGSIVIAPFMESATTPWVIKPWTDDNQWITDPAAIVATLKQSKTDGYQPTVNDYVKFPGIESLLPPEAKGQSISSTLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLGADTDMNPEADRPGDYPVSQYPVHMLPLNHLIDNLLVRGCLGVGFGMDGQGLYVSNITVEDCAGSGAYLLTHETVFTNIAVIDTNTKDFPANQIYISGACRVNGLRLIGIRSTAGQGLTIDAPNSTVSGITGFVDPSRINVYNLMEEGLGNSRINSFNNGSAALRFRIHKLSKTLDSGSVYSHINGGPGSGSAWTEITAISGSLPDAVSLKINRGDYRAVEIPVAVSALPDNAVRDNGAISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72788,62610 Da
isoelectric point:5,05153
aromaticity:0,08918
hydropathy:-0,13406

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
93–132
IPR040775 IPR012332
IPR015331
RBD
138–684
IPR015331
UPW35735.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPW35735.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9946
Central domain 155 623 470 0,9727
C-terminal 624 684 60 0,9108
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-623
C-terminal
624-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_TUMS_E15
[NCBI] 		2936927 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPW35735.1 [NCBI]
Genbank nucleotide accession
ON167532.1 [NCBI]
CDS location
range 24012 -> 26066
strand +
CDS
ATGTCCAGTGGTTGCGGTGATGTACTGTCACTTAACGATTTACAAATAGCCAAGAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGCGGTGTAGCAGGCGGCGCAGATATCGACTACGCCACTAACCAGGTAACAGGGCAGACGCAGAAGACGCTGCCAGCGGTCTTACGTGACGCCGGTTTCTCTCCGGCATCTTTTAACTTCACAACCGGCGGGACCCTGGGAGCTGACGACGCGGATAAAGCGGTTCTTTGGCCTATTGAAGACGGCGGAGACGGTAACTATTACGTATGGCGCGGGTCACTCCCTAAAGTTATCCCTGCGGCGTCGACACCTCTTACGACGGGCGGCATTTCGGATTCCGCTTGGGTCGCGTTCGGGGATATCACCTTCCGTGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCTGTTGATAGTGTTCTTATCGACCGCGATTACACTTTCAGCAATAACGAGACCGTTAACTTCGGTGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATTGGTGACGGAAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATTGTAATAGCCCCCTTTATGGAGAGCGCTACAACGCCGTGGGTGATTAAACCGTGGACTGACGACAATCAGTGGATAACCGACCCCGCGGCAATCGTGGCCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTATGTCAAGTTCCCTGGTATAGAATCCCTTCTCCCTCCGGAAGCTAAAGGGCAAAGCATATCTTCTACCCTGGAAATTAGGGAATGTACGGGCGTCGAGGTTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGCGGATGCCATTTCTGTAAGATGGTAGACGCTGACAACCCGAGCGGCGGAAAAGATGGCGTAATTACCTTTGAAAACCTGAGCGGCGATTGGGGCAAGGGTAACTATGTTATTGGCGGGCGCACAAGTTACGGTTCGGTAAGTAGCGCTCAATTCTTACGAAACAATGGCGGTTTCGCGCGCGATGGCGGGGTCATCGGGTTTACCTCGTATCGTGCAGGGGAAAGTGGTGTTAAGACGTGGCAAGGTACGGTAGGTTCTACGACATCTCGTAACTACAACCTGCAATTCCGGGATTCGGCGGTACTGTACCCTGTATGGGACGGCTTCGATTTAGGCGCAGATACCGACATGAACCCGGAAGCAGATAGGCCGGGGGATTACCCTGTATCTCAGTACCCAGTACATATGCTCCCGTTAAACCATTTGATTGATAACTTGTTGGTTAGAGGGTGTTTAGGAGTTGGCTTCGGCATGGATGGGCAAGGGCTATACGTTTCTAACATAACCGTAGAAGATTGCGCTGGCAGTGGCGCATATCTGTTGACGCATGAAACAGTATTCACAAACATTGCGGTAATAGACACGAATACTAAAGACTTTCCTGCTAATCAGATTTACATTTCAGGGGCTTGCCGTGTTAATGGGCTGCGCTTGATAGGCATCCGGTCTACCGCAGGCCAAGGGTTAACAATAGACGCGCCAAACAGTACAGTTAGCGGAATAACTGGATTCGTCGACCCCTCAAGGATTAACGTATACAATTTGATGGAGGAAGGTCTTGGTAACTCTCGCATAAACAGTTTCAATAATGGTTCTGCGGCGCTTCGGTTTCGTATTCATAAACTGTCAAAAACCCTTGATAGTGGGTCCGTGTACTCCCACATTAACGGCGGGCCAGGTTCTGGTTCAGCATGGACCGAAATTACCGCTATTTCGGGGTCCTTGCCTGATGCCGTGTCATTAAAAATAAACAGGGGAGATTATCGTGCTGTTGAGATACCGGTAGCGGTGTCCGCCCTACCAGACAACGCTGTCAGGGATAACGGGGCCATATCACTGTATCTGGAAGGCGATAGCCTTAAGGCGTTAGTTAAGCGGGCCGATGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5247923bb3c0a42fe1e0564ecc6e3c03a03d95ec1656959d4b66c692c66fbe15
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6903
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome analysis of Samlonella phage vB_SenS_TUMS_E15 Torkashvand,N., Kamyab,H., Shahverdi,A.R., Khoshayand,M.R. and Sepehrizadeh,Z. 2023-04-25 — GenBank