Protein

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Genbank accession
ATB52639.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MPVEVIGADDGVDKLNEAWPDGSEPVKQGDDHLRNIKKAVKNQERLNKESNFGISNPNLFINGDFSVWQRGYSFSAVTGQYTADRWIIGNNGGNLNVSAGYGLGAGAQSNGIAFTCTGAVNPRLNQRVEANTFRSTSATHVTISFWAHSTADGLALEWLPRSPVNVNDWSSVVDLGTHSLGTTVSNQWKFFTKTLPITDAFRMGFGGNVQISGTITGTVTFSRMKLEFGEIASEFIPEDPATTLTQCQRYYYTPVYGQPGAFIFLDTVGAPYNDLTTKLYAHHIKIFLPMSMRSAVNPAASGFTVKVGTSDVSGFYASTMDYSNNIWAIRNAAGGYVNTGDLTLRFFIDMEL
Physico‐chemical
properties
protein length:352 AA
molecular weight: 38387,45040 Da
isoelectric point:5,69052
aromaticity:0,11648
hydropathy:-0,19744

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATB52639.1
1 352
Domain Start End Length (AA) Confidence
N-terminal 1 200 200 0,1695
Central domain 201 341 142 0,0357
C-terminal 342 352 10 0,9988
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-200
Central
201-341
C-terminal
342-352

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VspS_VS-ABTNL-3
[NCBI] 		2026084 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATB52639.1 [NCBI]
Genbank nucleotide accession
MF497422.1 [NCBI]
CDS location
range 1134 -> 2192
strand +
CDS
ATGCCAGTAGAAGTAATTGGCGCCGACGATGGCGTAGACAAACTTAACGAAGCCTGGCCTGATGGTTCAGAACCTGTTAAGCAGGGGGATGATCACCTCCGCAATATTAAGAAAGCCGTAAAGAATCAAGAGAGATTGAATAAAGAAAGTAACTTTGGAATCTCTAATCCAAATTTATTTATTAATGGAGATTTCTCTGTATGGCAGCGTGGTTATTCCTTTTCGGCAGTTACAGGGCAGTATACAGCAGACCGATGGATTATTGGTAATAATGGAGGTAATTTAAATGTAAGTGCTGGGTATGGACTGGGTGCAGGAGCTCAATCTAATGGTATAGCTTTTACTTGTACAGGAGCTGTAAACCCTAGACTTAACCAACGCGTAGAAGCTAATACATTTAGATCTACTTCAGCTACTCATGTGACAATATCTTTTTGGGCACATTCCACTGCGGATGGACTTGCTCTTGAGTGGCTACCAAGATCTCCAGTTAATGTGAATGATTGGTCTTCTGTTGTGGATTTAGGAACGCATAGTTTGGGAACTACGGTATCTAACCAGTGGAAATTCTTCACAAAAACACTCCCAATTACTGACGCATTTCGTATGGGATTTGGGGGTAATGTTCAGATTTCAGGGACTATTACAGGAACTGTAACTTTCTCTCGAATGAAATTAGAGTTCGGTGAGATTGCTAGTGAGTTTATTCCAGAAGATCCGGCAACTACCTTAACCCAATGCCAGCGTTATTATTACACACCAGTATATGGACAACCGGGAGCTTTTATTTTCTTAGATACGGTAGGAGCTCCCTATAACGATTTAACAACAAAACTATACGCACACCATATAAAAATTTTCTTACCTATGAGTATGAGAAGTGCAGTAAACCCAGCTGCTTCTGGTTTTACTGTAAAGGTAGGCACATCGGATGTAAGTGGTTTTTACGCTAGTACAATGGATTATTCCAATAATATCTGGGCGATTAGAAATGCAGCTGGGGGCTATGTAAACACTGGTGATTTAACTCTTCGCTTCTTTATTGATATGGAACTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e38b55f587b33fd3f3acba75a51f1898ec48d3c68bcf1a28b2e1170b043d5054
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7762
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome squencing of lytic phage specific to Vibrio splendidus responsible for the infection in the juvenile sea cucumber, Apostichopus japonicus Li,Z., Zhang,J., Ren,H. and Xu,Y. 2023-12 — GenBank