Protein

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Genbank accession
DBA59610.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MHVQEAYKNMDKLIVDVGKIRGLGNIVPPKSPSDFDLLASTITSSIEVINQENVNVFSLNYLNGSRLIITSGTWTEYAPNMSNFTVNCKLVYHTDNVIYSAPVTCTLPNGTVLNDTTDNDGNVSFTIPITPEISVYPLKIKYEGNTNVSSYTTYATIRLGNIQGLELNSDKSIISKSENTILTATLTGTNILGEHIGVKGQIVNFYEEYTPELILTSDKNILQKGETAKLSVQLKDSADGSLVAESGILTKIYQTLTEGLLFNDSTEHSYTSGTTRIFESISGTLTDLTDDWILEFDMKNDVGSGGINIGATQHHQPPSSANYRLFIGTDSTKFNFNNRTLQSNHSNTGTRETGTFYHFKLVKTGANVSAYYDDNLIATKNITWWNDYDSFEIYFINWNGTSVVKNISFRTI
Physico‐chemical
properties
protein length:412 AA
molecular weight: 45625,33090 Da
isoelectric point:4,99884
aromaticity:0,09709
hydropathy:-0,26966

Domains

Domains [InterPro]
G3DSA:2.60.120.560
RBD
246–408
G3DSA:2.60.120.560
DBA59610.1
1 412
Architecture
RBD
RBD 246-408 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
DBA59610.1
1 412
Domain Start End Length (AA) Confidence
N-terminal 1 338 338 0,7574
Central domain 339 401 64 0,3163
C-terminal 402 412 10 0,6832
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-338
Central
339-401
C-terminal
402-412

Taxonomy

  Name Taxonomy ID Lineage
Phage Methanobrevibacter gottschalkii virus vir075
[NCBI] 		3232051 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Methanobrevibacter gottschalkii
[NCBI] 		190974 cellular organisms > Archaea > Methanobacteriati > Methanobacteriota > Methanomada group > Methanobacteria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DBA59610.1 [NCBI]
Genbank nucleotide accession
BK068243 [NCBI]
CDS location
range 27092 -> 28330
strand +
CDS
ATGCACGTGCAGGAGGCATATAAAAATATGGATAAACTAATAGTGGACGTTGGTAAAATCAGAGGATTGGGGAATATTGTTCCCCCTAAATCTCCTTCTGATTTTGACCTGCTCGCCAGCACAATCACTTCCAGTATAGAAGTGATTAATCAAGAAAACGTGAATGTATTCTCATTAAATTATTTAAATGGGTCCCGATTAATCATTACCAGTGGTACTTGGACGGAATACGCTCCTAATATGAGTAATTTCACAGTTAATTGTAAACTAGTGTATCATACGGATAATGTGATTTATTCAGCACCGGTCACTTGCACTCTCCCAAATGGGACTGTGCTGAATGATACTACTGATAATGATGGAAATGTTAGTTTCACAATACCTATCACTCCAGAAATTAGCGTGTATCCTTTAAAAATAAAATATGAAGGTAACACTAATGTTTCAAGTTACACTACATATGCTACTATAAGGCTAGGAAACATACAAGGTTTGGAGTTAAATAGTGATAAATCAATCATCAGTAAAAGTGAAAACACTATCTTAACTGCCACTTTAACAGGTACTAACATTTTAGGTGAACATATTGGAGTTAAAGGTCAAATAGTGAATTTCTATGAAGAATACACTCCCGAATTAATATTAACTAGTGATAAAAATATCTTGCAAAAAGGTGAAACAGCAAAACTTAGTGTGCAATTAAAAGATAGTGCTGATGGAAGCCTTGTAGCTGAAAGTGGAATACTTACTAAAATTTATCAAACACTCACAGAAGGTTTATTATTCAATGATTCCACCGAACACTCATACACTAGTGGAACTACACGGATATTTGAAAGTATCAGTGGCACTTTAACAGATTTAACAGATGACTGGATACTTGAATTTGACATGAAAAACGATGTGGGAAGTGGTGGAATAAACATCGGAGCAACACAGCATCACCAACCACCTAGCAGTGCGAATTACAGATTATTCATTGGTACAGATAGTACTAAATTCAATTTCAACAACCGTACACTCCAATCAAACCATTCAAATACAGGTACAAGAGAAACCGGTACTTTTTATCACTTTAAACTTGTGAAAACAGGAGCGAATGTATCAGCATATTATGATGATAATCTGATCGCTACAAAAAACATCACATGGTGGAATGATTATGATTCATTTGAAATTTACTTCATCAATTGGAATGGAACTAGTGTGGTTAAGAACATTTCTTTTAGAACAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4671c376bf72b7d222488355ee7fb2864f84e6363538d740b73815ded33cf0ee
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6026
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Stable coexistence between an archaeal virus and the dominant methanogen of the human gut Baquero,D.P., Medvedeva,S., Martin-Gallausiaux,C., Pende,N., Sartori-Rupp,A., Tachon,S., Pedron,T., Debarbieux,L., Borrel,G., Gribaldo,S. and Krupovic,M. 2024 39231967 GenBank