Protein

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Genbank accession
YP_010112419.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 0,74
Protein sequence
MTNTLLTNTFTGGMNLDVDVTMIPNNQYRYAENVRVITDTAGTTGVLQNVLDTKMVEGGDFISSGEKVLATTTIDKYGIILTVNGDKICKIYRVENYDNPPLVDSVIVKGKLGYNKDSQVKILANYESATVIKIYIACPDQVIKTLNIMDGRYMQTPQGNPLLDSDGNLKNVNLLDIQMSTLLNAPEVISLGGGSLTTGIVQYAYQLFNARGSATNFSPVSNAIHLTNSDVSGGLKNYMGNNKDVNSGKSVNFKVKLNDIPEGLFDNIRLIRIKYNDYTEDPVIEVFQENEITTSTNEYTFNDTGGTAINTITIEEFNKIQESTFTAGTIEAKNNILFAANIKESTWKPEYDARSYRFTANNRLILNGSSLDQNIDVLVSNTNLTTTLSSIPQSHDCINPFNSLDPSFNNRDVCKYQFGTGKLGGTGLNIDYEFVTTDITLDDNFTNTLTITTPVSTSNLIRIDRLDGSTLETISLGPSGINRFKNYADPYFASKYKGYHRDEVYRFGIVFFNDRNVATPVYWIGDIKFPHCWEACPWYVQDLTLYGKAIGVNFKIKNYPDGAKAYLIVRCKRTKEDRTILTQALLSGTVSYPYHSVRNADYDIASENTRRPYTFLGNSWQKIGQIPSSILSGVNYQWLVNERVDNYISTLISPEIDANQDDMAKSIKGCRADMCLKLDPRTNYKAVLPSIYQATAYGYYVRSNRTLVVDDGIAITNEYTTQSGLTGSIASSPLESTNDIFIVADGAEYTGITNVIGKRYIAHYTGFNTTRGKFDINESVSPVIMENFSWPDAASKHSSISGRTYLNASVSHNGRQDNEEVYNKTGYFGNCVVVTRDNNNIGVLLNINIDRAGEEPMTPRVSGVIADLIREFNYTQFTTPIVNIKTDNIPYSGNTYSARSNSTYVSTYTYHNVSDSSVTVFGGDTYLGVLDHKTVMYIPQFWGGTESPDINCGVSVSDYIPFETTINLALLYGSSASRMSSDDLDYVDPYLSLTIAGASYGGHTLSKPYFAYNDAYSRQPDAQLYVTDSNYSISNLLSGNRIRYSGTKTANEISDSWTSFKAADYLDVDSSHGDITNLKLFNNLLLFWLKDAVGVASVNDRSLITDNNQAPLVLGTGGVLDRYDYLTTSNGSDKSNDKSIVGTPNGLYWYDDNKNEICSYGNGILKLSKVKSVQSWLNTDKQKAKVSIYDPKFNEVQIGFEDKVLTYDEQILLFSSFRTFNPDDYLSFPDKLLYIKDLIIKENANFPLNEMKSRLQFVVNKDPLLTKTFDNVFFSGEFKDVRKMIQAIKFTTKTQESTIFKDNTEINNPIEQREDTFRFAVGREKNPVDDMSLPSRMKGKYMICDYIFNCNDLHDFKLPNMNTTYRYSMV
Physico‐chemical
properties
protein length:1370 AA
molecular weight: 153336,85040 Da
isoelectric point:5,13537
aromaticity:0,10876
hydropathy:-0,35927

Domains

Domains [InterPro]
IPR057889
STR
6–1237
IPR057889 IPR057888
DC_1659
RBD
1220–1370
DC_1659
YP_010112419.1
1 1370
Architecture
STR
RBD
STR 6-1237 | RBD 1238-1370
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010112419.1
1 1370
Domain Start End Length (AA) Confidence
N-terminal 1 313 313 0,6073
Central domain 314 512 200 0,6133
C-terminal 513 1370 857 0,1905
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-313
Central
314-512
C-terminal
513-1370

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr60_1
[NCBI] 		2772082 Uroviricota > Caudoviricetes > Crassvirales > Loutivirinae > Buchavirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010112419.1 [NCBI]
Genbank nucleotide accession
NC_055891 [NCBI]
CDS location
range 66090 -> 70202
strand +
CDS
ATGACTAATACATTATAGACAAATACATTTACAGGTGGTATGAATCTCGATGTAGATGTTACCATGATACCAAATAATCAGTATAGATACGCAGAAAATGTACGCGTTATTACTGATACTGCTGGTACTACCGGAGTATTGCAGAATGTCTAGGATACTAAAATGGTTGAGGGAGGAGACTTTATAAGTTCTGGTGAAAAAGTATTAGCTACAACTACTATTGATAAATATGGCATCATACTTACTGTAAATGGTGATAAGATATGTAAAATATACAGAGTTGAAAATTATGACAATCCTCCATTGGTAGATAGTGTAATTGTTAAGGGCAAGCTTGGTTATAATAAAGATTCTCAAGTAAAAATCTTGGCTAATTACGAATCTGCAACTGTCATAAAGATTTATATTGCCTGTCCAGATCAAGTGATAAAAACACTTAACATAATGGATGGTAGATATATGCAAACTCCTCAAGGTAATCCTCTACTAGATAGTGATGGCAATCTAAAGAATGTGAACTTGCTAGACATACAAATGTCCACATTGTTAAATGCTCCCGAAGTAATATCATTAGGAGGAGGATCTTTAACTACAGGTATAGTACAATACGCATACCAATTGTTTAATGCTCGTGGTTCTGCTACTAATTTTTCTCCAGTTAGTAATGCAATACATCTAACTAATAGTGATGTTTCTGGAGGGTAGAAGAATTACATGGGTAATAACAAAGACGTAAATTCAGGTAAAAGCGTAAATTTTAAAGTCAAGTTAAACGATATTCCAGAAGGACTATTTGATAACATACGACTAATAAGAATAAAGTATAATGATTATACTGAAGATCCTGTAATAGAAGTATTTCAAGAAAATGAAATAACTACTTCTACAAATGAATATACTTTTAATGATACCGGTGGTACAGCAATAAATACTATTACTATAGAAGAATTCAATAAGATTCAAGAAAGTACTTTTACTGCTGGTACTATAGAAGCAAAAAATAATATTCTATTTGCGGCTAACATTAAAGAATCTACCTGGAAACCGGAATATGATGCTAGGTCTTACAGATTTACAGCTAATAACAGATTGATATTAAACGGGTCTAGTTAGGATCAGAACATAGACGTATTAGTAAGTAATACTAACTTAACTACTACCTTATCTTCTATACCGCAATCGCATGATTGTATTAACCCTTTCAATAGTTAGGATCCTAGCTTTAACAATCGAGACGTATGTAAGTACCAATTTGGTACAGGAAAATTAGGGGGAACAGGTTTAAATATAGATTATGAGTTTGTTACTACTGATATTACTCTTGATGACAATTTTACTAATACGCTTACTATAACTACTCCAGTATCTACATCTAATTAGATAAGAATTGATAGATTAGACGGAAGTACTCTAGAAACTATATCTTTAGGTCCTAGTGGAATCAATAGATTTAAAAATTACGCGGATCCATACTTTGCATCTAAATATAAAGGATATCACAGAGATGAAGTATATCGTTTCGGTATTGTGTTCTTTAATGATAGAAATGTGGCTACTCCTGTATATTGGATTGGTGATATTAAATTTCCACATTGCTGGGAGGCGTGTCCTTGGTACGTACAAGATTTAACTCTATATGGTAAAGCTATAGGTGTTAACTTTAAGATAAAGAATTATCCAGATGGTGCAAAAGCATATTAGATAGTAAGATGTAAAAGAACTAAAGAGGATAGAACGATTCTTACACAAGCGTTATTATCAGGCACAGTATCATATCCGTATCATTCTGTAAGAAATGCAGATTATGATATAGCGTCTGAGAATACCAGAAGACCTTATACATTCTTAGGTAATAGTTGGCAGAAGATAGGTCAAATACCAAGTTCAATACTAAGTGGAGTAAATTATCAGTGGTTAGTAAATGAAAGAGTGGATAACTATATATCTACTTTAATTAGTCCTGAAATAGATGCCAATCAAGATGATATGGCTAAAAGTATTAAAGGATGTAGAGCAGATATGTGTTTGAAATTGGATCCAAGAACTAACTACAAAGCTGTATTACCTAGTATTTATCAAGCTACAGCTTATGGGTACTATGTTAGATCTAATAGAACTTAGGTAGTAGATGATGGAATAGCAATCACGAACGAATATACTACACAAAGTGGTTAGACAGGATCTATTGCTAGTTCTCCCTTAGAATCTACAAATGATATATTCATAGTAGCAGATGGCGCTGAATATACTGGTATAACCAATGTAATAGGTAAAAGATACATTGCTCATTATACTGGATTTAATACTACTAGAGGTAAATTCGATATTAATGAATCAGTTAGCCCTGTTATAATGGAAAACTTCTCTTGGCCGGATGCTGCATCAAAACATTCTTCTATCTCTGGTAGAACATATCTTAATGCTTCTGTAAGTCACAATGGTAGACAAGATAATGAAGAAGTATATAATAAAACAGGTTACTTTGGAAATTGCGTTGTCGTTACTAGAGACAATAACAATATTGGAGTATAGTAGAACATAAATATAGACAGAGCAGGTGAAGAACCTATGACTCCTAGAGTATCTGGAGTAATTGCAGATCTTATTAGAGAATTTAATTATACACAGTTTACTACTCCTATAGTAAACATAAAAACAGATAACATTCCTTATAGTGGCAACACATACAGTGCACGTAGTAATTCTACCTATGTGAGTACTTATACTTACCATAATGTGTCTGACAGTAGTGTAACTGTATTTGGAGGTGATACTTACTTAGGTGTATTAGATCATAAAACAGTAATGTATATTCCACAATTTTGGGGTGGTACCGAAAGTCCAGATATAAACTGTGGAGTATCTGTATCTGATTATATTCCTTTTGAAACTACTATAAATTTAGCATTATTATATGGTAGCTCTGCATCAAGAATGTCTTCAGATGATCTTGATTATGTAGATCCATACTTGTCATTGACCATAGCTGGAGCTTCTTATGGTGGGCATACATAGTCTAAACCATACTTTGCTTATAATGACGCTTACTCTAGACAACCAGATGCTCAACTATATGTAACAGATTCTAATTATTCTATTAGTAATCTATAGTCTGGAAATAGAATAAGATATTCTGGTACTAAGACTGCTAATGAAATATCAGATAGTTGGACATCATTTAAAGCTGCTGATTATCTAGATGTAGATTCTTCTCATGGAGATATAACTAATCTAAAATAGTTTAACAACTAGTTACTATTTTGGTAGAAGGATGCAGTAGGAGTAGCATCTGTTAATGATAGATCACTTATAACTGATAATAATCAAGCTCCTCTTGTATTAGGTACTGGTGGAGTTCTAGATAGATATGATTATCTCACCACTTCTAATGGATCCGATAAATCAAATGACAAGAGTATTGTTGGTACTCCTAATGGTTTGTACTGGTATGATGATAATAAGAATGAGATATGTTCATATGGCAATGGAATATAGAAGTTATCTAAAGTTAAAAGTGTTCAATCTTGGTTGAATACAGATAAACAAAAAGCTAAAGTAAGTATATATGACCCTAAATTTAATGAAGTACAGATCGGATTTGAAGATAAGGTTCTTACTTATGATGAACAAATTTAGTAGTTTTCTTCATTCAGAACATTTAATCCTGATGATTATCTGTCTTTTCCAGATAAGCTCTTGTATATCAAGGACTAGATAATAAAAGAAAATGCAAATTTTCCGTTAAATGAAATGAAATCTAGGTTACAATTTGTAGTAAATAAAGATCCTTTACTTACTAAGACATTTGATAATGTGTTCTTCAGTGGTGAATTCAAGGATGTTAGAAAGATGATTCAAGCCATTAAGTTTACTACAAAGACCCAAGAGAGTACAATATTTAAAGATAATACAGAAATAAATAATCCAATAGAACAGAGAGAAGATACATTCAGATTCGCTGTTGGCAGGGAGAAAAATCCAGTAGATGATATGTCTTTACCCAGTAGAATGAAAGGTAAATATATGATATGTGATTATATATTTAATTGTAATGACTAGCATGATTTCAAACTCCCTAATATGAATACAACATATAGATATTCAATGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
30015b6b104a952c7549248cb6a011eed3fcc56414e33d85f481d750072f01ea
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7649
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank