Protein

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Genbank accession
YP_010662484.1 [GenBank]
Protein name
tail fiber protein host specificity
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,58
Protein sequence
MTLPQVGPISLDDIADEFSLALPVSMTDLYGIAVGIPTTGEISLSMFRGKGINIKKIVMTSTQNLVLSTLFTNEELNSPLDKRVFIDPGVSIGSLNAAIPAVQSGIFLGNLTIENYGSILGAGGNGGTNGSPGTDGGDAIVLDIPGVVIENYGFIRGGGGGGGSGGNGGNGGDGIYSFTRRDPKEGSSYSRTAPKFYVYEYRFNGVLGNVQWFWNDLQVSNVFSNDFVQVGTIKYFKGDQRSYQRKENAGSIQEYSFYSIHQEYPISYDTDGGLGGDYKGTFSDGGQGQGYLRSLSKGNQGLIGEPGGTNAGRGGDGGTGGDGGTWGIPGNAGSAGQDGTNGNISSGTVGQSGFSGGNAGRAVTSSQIYTVNNFGTIDGSY
Physico‐chemical
properties
protein length:381 AA
molecular weight: 39293,53120 Da
isoelectric point:4,59040
aromaticity:0,09974
hydropathy:-0,29344

Domains

Domains [InterPro]
DC_1679
STR
1–210
DC_1679 DC_0422
IPR007932
RBD
56–176
IPR007932
YP_010662484.1
1 381
Architecture
STR
RBD
STR 1-210 | RBD 211-381
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RL38J1
[NCBI] 		2663232 Uroviricota > Caudoviricetes > Pootjesviridae > Innesvirus RL38J1 >
Host Rhizobium leguminosarum
[NCBI] 		384 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010662484.1 [NCBI]
Genbank nucleotide accession
NC_070888.1 [NCBI]
CDS location
range 63293 -> 64438
strand +
CDS
GTGACACTTCCGCAAGTCGGTCCTATCTCTCTAGACGATATCGCAGACGAGTTCAGTCTCGCTCTTCCTGTGAGCATGACGGACTTGTACGGCATCGCTGTAGGCATTCCTACGACTGGTGAGATCTCTCTGAGCATGTTCAGAGGAAAAGGCATCAACATCAAGAAGATCGTGATGACCTCCACCCAGAACCTCGTTCTGTCGACTCTGTTCACGAACGAGGAACTGAATTCTCCTCTCGACAAACGGGTGTTCATCGATCCAGGTGTTTCGATCGGATCGCTGAATGCTGCTATTCCTGCTGTGCAGTCTGGCATCTTCCTGGGCAACTTGACCATCGAGAACTACGGAAGCATTCTCGGTGCTGGAGGCAACGGAGGCACGAACGGTTCTCCTGGTACGGACGGCGGTGATGCTATTGTTCTTGACATCCCTGGTGTCGTCATCGAGAACTACGGCTTCATCCGTGGCGGCGGTGGAGGTGGCGGAAGTGGTGGCAACGGTGGCAACGGCGGTGATGGCATCTACTCGTTTACTCGACGTGATCCGAAGGAAGGAAGTTCCTACTCTCGTACCGCTCCGAAGTTCTACGTCTACGAATATCGCTTCAACGGAGTTCTCGGTAACGTGCAATGGTTCTGGAACGATCTTCAGGTCTCTAACGTCTTCTCGAACGATTTCGTCCAGGTCGGCACCATCAAGTACTTCAAAGGCGATCAGAGATCGTATCAGAGAAAAGAGAATGCCGGATCGATCCAGGAGTACTCGTTCTACTCGATCCATCAGGAATATCCGATCTCGTACGACACAGACGGCGGACTCGGTGGTGACTACAAAGGCACGTTCTCTGACGGCGGTCAAGGCCAAGGATATCTGCGATCTCTGTCGAAAGGCAATCAAGGTCTCATCGGTGAACCTGGTGGCACGAATGCTGGACGAGGCGGTGACGGTGGAACTGGCGGAGACGGCGGCACGTGGGGAATTCCTGGAAATGCCGGTTCTGCAGGTCAAGATGGCACGAACGGAAACATCTCTTCTGGAACTGTAGGTCAGAGCGGCTTCTCTGGTGGAAACGCTGGTAGAGCCGTCACCTCGTCTCAAATATACACTGTAAACAATTTCGGCACGATTGATGGAAGTTACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
9a60af42a9acf56684a50726cdb7bb6f37fe7219079d0fee4fd18f16a23cb900
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6506
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_RLeM_RL38JI Gunathilake,D., Bhat,S., Yost,C.K. and Hynes,M.F. 2022-09-15 — GenBank