Protein

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Genbank accession
YP_009153851.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
Protein sequence
MPPLEKIMAVVGVPGWIGSSSVNETGQRWMSQAAGQLRLGVPCWMSQFAGRSREIIHTLGADHNFNGQWFRDRCFEAGSTPIVFNITGDLVSYSKDVPLFFMYGDTPNEYVQLNIHGVTMYGRGGNGGSNSPGSAGGHCIQNDIGGRLRINNGGAIAGGGGGGGGGYYSPFPRIRLTFGGGGGRPFGAPGGSINMQSGATGGTISSPGSGSVNIIYNGGNGGEVGSAGGRCNIRGQGSEYDGGAAGYAVIGSAPTWQNVGAIYGPRV
Physico‐chemical
properties
protein length:267 AA
molecular weight: 27245,96200 Da
isoelectric point:8,73245
aromaticity:0,09363
hydropathy:-0,21685

Domains

Domains [InterPro]
DC_2135
STR
3–147
DC_2135
IPR048291
ATT
8–49
IPR048291 IPR007932
YP_009153851.1
1 267
Architecture
ATT
STR
RBD
ATT 3-49 | STR 50-147 | RBD 148-267
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009153851.1
1 267
Domain Start End Length (AA) Confidence
N-terminal 1 21 21 0,9186
Central domain 22 226 206 0,9287
C-terminal 227 267 40 0,5372
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-21
Central
22-226
C-terminal
227-267

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage PST
[NCBI] 		1351740 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tequatrovirus
Host Yersinia pseudotuberculosis
[NCBI] 		633 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009153851.1 [NCBI]
Genbank nucleotide accession
NC_027404.1 [NCBI]
CDS location
range 157638 -> 158441
strand +
CDS
ATGCCCCCTTTGGAGAAAATTATGGCAGTAGTTGGTGTTCCTGGTTGGATTGGTAGTTCATCCGTAAATGAAACAGGACAACGATGGATGAGTCAAGCAGCTGGTCAATTAAGATTAGGTGTTCCTTGCTGGATGAGTCAATTTGCAGGTCGCTCAAGAGAAATTATTCATACACTTGGAGCAGACCATAACTTCAATGGTCAATGGTTCCGAGATAGGTGTTTTGAGGCAGGTAGTACACCTATAGTGTTTAATATCACTGGAGATTTAGTATCATATTCTAAAGATGTTCCTTTATTCTTCATGTACGGAGATACACCAAATGAATATGTTCAGTTAAATATACATGGCGTAACGATGTATGGTCGTGGAGGTAATGGCGGTAGCAATAGTCCTGGCTCAGCTGGGGGTCATTGTATTCAAAACGATATTGGTGGGAGACTAAGAATTAATAATGGCGGAGCTATTGCAGGCGGTGGCGGCGGTGGCGGCGGCGGATATTATTCTCCTTTTCCACGAATAAGATTGACCTTTGGCGGCGGGGGCGGTCGTCCTTTTGGTGCGCCAGGCGGATCTATTAATATGCAATCAGGCGCGACTGGTGGTACTATTTCTTCACCTGGCTCAGGATCCGTGAATATTATCTATAATGGTGGAAACGGTGGTGAAGTAGGTTCCGCGGGAGGTAGATGCAATATTCGCGGTCAAGGATCTGAATATGATGGCGGTGCTGCTGGTTATGCTGTCATAGGGTCCGCTCCAACATGGCAAAATGTTGGAGCAATATATGGTCCAAGAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5f5f9211ef028b655d15e9047abd7cb1c6e487af81719a9daa092beac5738a0a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8755
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Composite promoter-terminator motifs that mediate modular shuffling (PeSLs) are conserved among T4-like myoviruses infecting differing hosts Comeau,A.M., Arbiol,C. and Krisch,H.M. 2014-06-19 — GenBank