Protein

View in Explore
Genbank accession
XVB93814.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MTTPTNNNIPSNSVQDRLYNAEKFDEFMNSDNPNYTDRKGTKRWTLNGIRQAIVNWMDGFSSDVGAANIGTETGQNLSDRLSGLGVVFKSVSDFIYSPVSPDKITVRGFYNDGDGGNGTWVKTGVLDQSKKSSHLPNQAKIYNSVGAEYVLSLDAIIEIDAKANGAKGVNNLTDNEFVCINQVLNGISTVFGYQWCDSGYSVLTQGKTYKTIKILVTASPYGSFYRIGKETFNLKGGMSLDYGLSVMRLSPHPDFTYKKTGKRIHAISTKDFVSYFRNQSTSWDLASFANSTISGGIFIGDHAPAVSRDDATAGLGLFIINPKHVNISQVECRGFLTGGVFREWNARFTNDKHIHSAADYVLERDDDKDVQQGHFYGVKLNNCLFSGNRDCEVINMCDWSSIDTCKINNERAWILGVDAVAPKHLLINTGSCFSLTGGEVSVYHDNYTSATSPYYPYTYAPQKSTIFDAAKLSGYAAHYSEWNKCKFEIDNVGFTYSTGDGDDLSTTQRYSGLTIEHDTNYKPDRKNSFLLRFADGYFGSFSGDDYAGWVYNDPTLGFSRGDVPRAIMNMTVGRPVHDDSAFLHGGYDFKYGTYNVGFWGSAVPDVDCLRGTRDKGFLNDNGLMFNTGTLVLPVANPSYDSTICIWYYDHTGNYDPKNVRMNSYSPVSTGQGLLSYISYANNLIDYGNGWKLMVIRNLRPFGYSEEKSYQGQSSILITTNSETPITLKLVRAYKGGVPLFPAALPDYIPLTQTNGVWGTMTSSTGMDLNVSSFGGGIFRPGDLIDGWYYLKHDSRWNFIQDLNTYGYPLNRRFVLTSGSAGSYLSTNTFTGTVTSKGTGFTEIDFGANVNKIFLGIPLNISGSTGSVTSGKFNLASRTINPDGTFSTKYIVDGTLGNVGDVLTIDNSLGEYTFQPIRIPSLQVTQWINTDGSLTVKGVSNLAGTIFAGTSRPDGDNTRTSGSSSYRYSASYAVKRMYTGTLGDFYGAGSPEGVLAASIGSTYRRTDGGPGTTFYVKESGTDKTGWVAK
Physico‐chemical
properties
protein length:1028 AA
molecular weight: 112679,91480 Da
isoelectric point:6,17933
aromaticity:0,12451
hydropathy:-0,35379

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB93814.1
1 1028
Domain Start End Length (AA) Confidence
N-terminal 1 176 176 0,9924
Central domain 177 642 467 0,9810
C-terminal 643 1028 385 0,2527
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-176
Central
177-642
C-terminal
643-1028

Taxonomy

  Name Taxonomy ID Lineage
Phage Raoultella phage VB_ZK_P1
[NCBI] 		3425683 Viruses > unclassified bacterial viruses >
Host Raoultella ornithinolytica
[NCBI] 		54291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB93814.1 [NCBI]
Genbank nucleotide accession
PV662128.1 [NCBI]
CDS location
range 144837 -> 147923
strand +
CDS
ATGACTACCCCAACTAATAACAACATTCCCAGTAATTCTGTACAGGACAGATTGTACAACGCTGAGAAATTCGACGAATTTATGAATTCGGATAACCCCAACTATACTGATCGTAAAGGAACTAAACGCTGGACACTGAACGGTATTCGACAAGCCATTGTCAATTGGATGGACGGTTTTTCTTCTGATGTCGGTGCCGCTAACATAGGTACTGAAACTGGTCAGAATTTGTCCGACCGGTTAAGTGGATTGGGTGTTGTATTTAAATCTGTATCTGATTTTATTTACTCGCCTGTCTCACCTGATAAAATAACCGTCAGGGGGTTTTATAATGATGGTGACGGAGGAAATGGAACGTGGGTAAAAACAGGCGTTCTTGATCAGAGTAAGAAAAGCTCCCATTTACCAAATCAGGCTAAAATTTATAACTCTGTTGGGGCGGAATATGTTCTTTCTCTTGACGCCATCATCGAAATAGACGCTAAAGCAAACGGCGCTAAAGGTGTGAATAATCTCACCGATAATGAATTCGTTTGCATAAACCAAGTTTTAAATGGAATTTCCACCGTATTTGGTTATCAATGGTGTGATTCAGGTTACAGTGTACTGACCCAAGGAAAAACCTACAAAACAATAAAAATTCTTGTGACCGCAAGCCCTTACGGGAGTTTTTACAGAATAGGTAAAGAAACTTTTAATCTTAAAGGTGGAATGTCTTTAGATTATGGTTTATCTGTAATGAGATTGTCCCCTCATCCAGATTTCACTTATAAGAAAACAGGCAAAAGAATTCACGCCATAAGTACCAAGGACTTCGTGAGTTATTTTAGAAATCAGAGTACATCGTGGGATTTGGCTTCATTTGCAAACTCCACAATATCTGGCGGTATTTTTATAGGTGATCATGCTCCAGCGGTAAGTCGTGATGACGCTACTGCTGGTTTAGGGCTTTTTATTATAAACCCTAAACACGTAAATATTTCACAAGTAGAGTGTAGAGGATTTTTAACTGGTGGGGTGTTTAGAGAGTGGAACGCTAGATTTACGAATGATAAACATATTCATTCTGCCGCTGATTATGTTTTAGAGCGAGATGACGATAAAGATGTCCAGCAAGGTCATTTTTACGGGGTGAAATTAAATAACTGTTTATTCTCAGGTAATAGGGATTGTGAAGTCATCAACATGTGTGATTGGTCGTCGATCGACACATGTAAAATTAATAATGAAAGGGCCTGGATTTTAGGTGTGGACGCGGTAGCCCCTAAACATTTATTGATCAACACCGGTTCTTGCTTCTCATTAACAGGAGGTGAAGTAAGTGTCTATCACGATAACTACACGTCTGCCACTTCTCCATATTACCCCTATACTTACGCTCCTCAGAAATCAACGATTTTTGATGCTGCTAAACTTAGCGGTTATGCGGCGCACTATTCGGAGTGGAATAAATGTAAGTTTGAAATTGATAACGTGGGGTTTACATACTCTACCGGCGATGGTGACGATCTTTCTACTACACAGCGCTATTCAGGCCTGACCATAGAACACGATACCAATTATAAACCAGATCGCAAAAACTCTTTTTTATTGCGTTTTGCTGACGGTTACTTTGGATCTTTTAGTGGGGACGATTATGCAGGATGGGTATATAACGACCCTACTCTGGGATTTAGTAGAGGGGACGTGCCTCGAGCCATAATGAATATGACTGTCGGGAGACCGGTACATGACGATTCGGCATTTCTTCACGGAGGATACGATTTCAAATATGGAACTTATAATGTTGGATTTTGGGGAAGTGCAGTACCCGATGTCGACTGTTTAAGAGGAACCAGAGATAAGGGTTTCTTAAATGACAATGGATTGATGTTTAATACTGGGACTTTAGTTCTTCCGGTCGCTAACCCCAGTTACGACAGCACGATCTGTATTTGGTATTACGACCATACCGGTAACTACGATCCTAAGAATGTTAGGATGAACAGTTATAGCCCAGTCTCCACCGGTCAAGGACTTCTTTCATACATTTCCTATGCCAATAACTTGATCGACTATGGTAATGGTTGGAAATTGATGGTCATTAGAAACCTCAGACCATTTGGTTATTCCGAAGAGAAAAGCTACCAAGGACAGTCTTCCATTTTAATCACTACCAATTCGGAAACACCTATCACTCTTAAATTAGTTAGAGCTTATAAGGGCGGTGTTCCTTTATTTCCAGCGGCATTACCCGACTATATCCCATTGACTCAAACTAATGGGGTTTGGGGAACGATGACTTCATCCACCGGAATGGATCTAAATGTGTCAAGTTTCGGTGGGGGTATTTTTAGACCTGGCGATCTGATTGATGGTTGGTATTATCTTAAGCATGATTCCCGCTGGAATTTCATACAGGATTTAAATACTTACGGATACCCTCTTAATAGAAGATTTGTACTGACTTCAGGGTCAGCCGGTAGCTATCTTTCAACCAATACCTTTACAGGAACGGTGACTTCAAAGGGAACTGGATTTACGGAAATAGATTTCGGTGCGAACGTTAATAAGATTTTCTTAGGAATCCCGTTAAATATAAGCGGATCTACGGGTTCCGTAACCTCAGGAAAATTCAATTTAGCTTCGAGAACTATTAACCCGGACGGTACTTTCAGCACTAAATATATAGTAGACGGTACTTTAGGTAACGTCGGAGATGTATTGACCATCGACAATAGCTTAGGTGAATATACTTTCCAGCCAATTAGAATACCGTCATTACAAGTCACGCAATGGATAAATACAGACGGCTCTCTGACAGTTAAGGGTGTGTCTAATTTAGCAGGAACTATTTTTGCGGGGACGTCACGCCCAGATGGAGATAATACTAGAACCTCCGGATCGTCGTCATACAGATATTCCGCTTCGTACGCTGTAAAGAGAATGTACACCGGAACACTAGGTGACTTTTACGGAGCCGGATCCCCGGAGGGAGTTTTAGCGGCCTCCATAGGGTCTACTTACCGTAGAACGGATGGCGGGCCAGGAACCACCTTTTACGTAAAGGAATCCGGTACTGATAAAACCGGGTGGGTTGCCAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
20d10a492eb9d9ce0a067bbfc38c9979eb09cbe63d390efd7ef3c9e2d151be95
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7833
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and identification of R. ornithinolytica phage and its targeted bacteriostatic effect on chilled pigeon meat Feng,S., Zhong,L., Zhou,J., Huang,Y., Sun,Y., Yuan,D. and Liang,W. 2025 — GenBank