Protein

View in Explore
Genbank accession
XCD05752.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MAGPVNPAAAPEGARGGQYVTVPGFGLPGQSMPSHSRTADGSTVVYSPKGWRWEEAGDSYSLATAKVAAAAMEGAVRRVRSSMGEVFYIKGTPDTNPEFSGGATGDTCRVQDAITGEIVAEWRWTGSTWERMRVSNEQISNLDVGKLTAGSAAIAELTARKIASDVGRFLELTTDQLTVTGNASFVNATAHHIWTRIINATEGEFEQIRAGMLSANSVNASNLQAGAIDGQVITGATLQSTRESSRGLKITSDGIFAYSPAGKRTVWIDSHNGYVDIDGNIGISDTWSRAWFGDITDGVTGIDSGKLGDQWGVGIFMNKLNGPYKWPALVTFKEDPSVKGGMLYFQAPSHDDNGAASMRLSRGGWNAYGGKDNVWGFGLNGGGFTIGARGVVNLNATSTQASIWMNLKNPLGIESTMMRLTVLDNQARGVYCNGRATVMAWDSQHQIYVDSAGVHQVGNKAFAMRVPGEWQKRHKMLEHFSTESPYDGIEYWETIDLDAEGRATWTLPDYVPKIASVRAPWIVLTSDGASAVLNRTGYGTDAKPWTVSVTGRPNTSVAVLVKGARQIDVWDPDTDEVALDDRARTSLWTDPPGGPGDGPGTPPPPGYLYDGEGPFPKPANDA
Physico‐chemical
properties
protein length:622 AA
molecular weight: 66539,28910 Da
isoelectric point:5,28906
aromaticity:0,08842
hydropathy:-0,34469

Domains

Domains [InterPro]
DC_0469
RBD
17–570
DC_0469
XCD05752.1
1 622
Architecture
RBD
RBD 17-570 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCD05752.1
1 622
Domain Start End Length (AA) Confidence
N-terminal 1 252 252 0,9305
Central domain 253 451 200 0,4310
C-terminal 452 622 170 0,7956
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-252
Central
253-451
C-terminal
452-622

Taxonomy

  Name Taxonomy ID Lineage
Phage Dulem virus 38
[NCBI] 		3145756 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCD05752.1 [NCBI]
Genbank nucleotide accession
PP511596 [NCBI]
CDS location
range 27382 -> 29250
strand +
CDS
ATGGCAGGCCCCGTCAACCCCGCTGCCGCGCCTGAGGGCGCCCGTGGCGGCCAGTACGTAACCGTCCCCGGCTTCGGACTGCCGGGGCAGTCCATGCCCTCCCACAGCCGCACCGCGGACGGCTCCACCGTCGTCTACAGCCCGAAGGGCTGGCGCTGGGAGGAGGCTGGGGACTCCTACAGCCTCGCTACCGCGAAGGTCGCCGCCGCGGCCATGGAGGGAGCTGTTCGGCGTGTCCGCAGCAGCATGGGGGAGGTCTTCTACATCAAAGGCACCCCCGACACCAACCCAGAGTTCTCTGGAGGCGCTACCGGGGACACCTGCCGCGTACAGGACGCTATCACCGGGGAGATCGTCGCAGAGTGGCGCTGGACAGGCTCGACCTGGGAGCGCATGCGCGTCTCCAACGAGCAGATCTCCAACCTCGACGTCGGCAAGCTCACCGCAGGGTCAGCAGCCATCGCCGAGCTGACGGCCCGGAAGATCGCCTCCGACGTCGGCCGGTTCCTGGAACTGACCACCGACCAGCTCACCGTGACCGGCAACGCCTCCTTCGTGAACGCGACCGCACACCATATCTGGACGCGAATCATCAACGCCACCGAGGGCGAGTTCGAGCAGATCCGTGCGGGCATGCTTTCAGCCAACTCCGTCAACGCCTCCAACCTCCAGGCGGGAGCCATTGACGGGCAGGTCATCACCGGCGCGACACTTCAATCCACGCGGGAGTCTTCCCGCGGGCTGAAGATTACTAGCGACGGGATCTTCGCCTACAGCCCCGCAGGCAAGCGCACCGTGTGGATCGACTCGCACAACGGCTACGTGGACATCGACGGCAACATCGGCATCTCGGACACGTGGTCGCGGGCATGGTTCGGCGATATCACCGACGGCGTGACCGGGATCGACTCCGGCAAGCTGGGCGACCAGTGGGGAGTCGGCATCTTCATGAACAAGCTGAACGGGCCCTACAAGTGGCCAGCCCTCGTGACGTTCAAGGAGGACCCCTCGGTCAAGGGCGGAATGCTCTACTTCCAGGCCCCCTCGCATGATGACAACGGTGCCGCTAGCATGCGTCTGTCGCGAGGCGGGTGGAACGCTTACGGCGGCAAGGACAACGTGTGGGGCTTCGGGCTCAACGGCGGGGGCTTCACAATCGGCGCTCGCGGTGTGGTCAACCTGAACGCCACCTCCACCCAGGCCTCGATCTGGATGAATCTGAAGAACCCCCTGGGCATCGAGAGCACCATGATGCGCCTGACCGTTCTCGACAACCAGGCCAGAGGGGTCTACTGCAACGGGAGAGCCACAGTGATGGCTTGGGACTCCCAGCACCAGATCTACGTAGACTCCGCAGGGGTCCATCAGGTGGGCAACAAGGCGTTCGCCATGCGCGTCCCGGGCGAGTGGCAGAAGCGCCACAAGATGCTAGAGCACTTCAGCACCGAATCCCCTTATGACGGCATCGAGTACTGGGAGACCATCGACCTCGACGCCGAGGGCCGCGCCACGTGGACCCTGCCTGACTACGTTCCGAAGATCGCCAGCGTGCGTGCCCCCTGGATCGTTCTCACCTCGGACGGAGCGTCAGCCGTGCTGAACCGCACCGGCTACGGGACGGACGCCAAGCCGTGGACGGTCTCGGTGACAGGTCGGCCGAATACCTCCGTAGCGGTCCTCGTGAAGGGAGCGCGTCAGATCGACGTCTGGGACCCCGATACCGATGAGGTCGCCCTGGACGACCGGGCCCGAACCTCTCTGTGGACCGACCCGCCGGGCGGCCCTGGCGACGGGCCGGGGACCCCGCCCCCGCCCGGGTACCTCTACGATGGTGAGGGGCCCTTCCCGAAGCCCGCTAACGATGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
68e0c2e0c99d9402d5649d1a672e23c128318444a4503019b9d4a88ed88c3160
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5613
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse circular DNA viruses in blood, oral, and fecal samples of captive lemurs Paietta,E.N., Kraberger,S., Lund,M.C., Custer,J.M., Vargas,K.M., Ehmke,E.E., Yoder,A.D. and Varsani,A. 2024-07-08 — GenBank