Protein

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Genbank accession
XRA21196.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MNVTNNKRRCNLALTKLTKPRARWATFKLKVAKAVSRSLYDKLTEFISIKDFGAKGDGITDDTDAIQAAIDFVESVAGSAPTISRAVTKLIVPKGQYVITRPLLIYQKDGFVLEGVGSMGSQFIVGSDMRWFEYPERWKALAEYQELKDNPAIFQVARRRATGVGDPATGIENTGYSQAGANEAAWYYTFKGIGFYGRNSIHRKKIHGIYAREIAKLKIDELYGEGMNIVLSFRTYASQICNVNTFDNKKPLNIVSGTSCSLDNIGSAWDDEGYTIHTIYSTYSNMGIDHWGKGSYAYDVGRISTSMIGCGSENGFGGILRVQGTPADEDKQQNRIGLHMDSCILQGGTITGAINDTGQSSVSDFGVPAMIDIVKSNVIFTNCAFLSEINRSGTITNLGARLTGSCDIVINQCADKAVRQSRTLKYFSEHVTNVGSVKEGYPRTKFNSDYDRDYGVALTSADTDVPVDSTTAFTFGNITSGNKHSHLNGDEWSTKTGGLYKFTWTGKISGDKINYLAIQLFNRPPNVNNEGTPRKILIDTSTTEIVSFCIEETFDVLPTDKVRFIASRGTGGGTCTLVKDSCLSWEQL
Physico‐chemical
properties
protein length:588 AA
molecular weight: 64511,93440 Da
isoelectric point:8,13773
aromaticity:0,09694
hydropathy:-0,29371

Domains

Domains [InterPro]
DC_2184
STR
13–573
DC_2184
IPR012334
STR
18–414
IPR012334
IPR011050
STR
45–413
IPR011050
IPR024535
ENZ
46–108
IPR024535
XRA21196.1
1 588
Architecture
STR
STR 13-573 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRA21196.1
1 588
Domain Start End Length (AA) Confidence
N-terminal 1 62 62 0,9792
Central domain 63 419 358 0,9898
C-terminal 420 588 168 0,9580
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-62
Central
63-419
C-terminal
420-588

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage phiVP140
[NCBI] 		3414682 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRA21196.1 [NCBI]
Genbank nucleotide accession
PV454341 [NCBI]
CDS location
range 1175 -> 2941
strand -
CDS
ATGAATGTAACTAACAATAAAAGGAGGTGCAACTTGGCACTAACTAAATTAACTAAGCCACGTGCTCGGTGGGCTACCTTCAAGCTGAAAGTAGCTAAGGCAGTCTCTCGAAGTCTTTATGATAAGCTGACTGAGTTTATTTCTATTAAGGACTTTGGTGCAAAAGGTGACGGAATCACAGATGATACAGATGCTATTCAGGCAGCTATTGACTTTGTAGAGAGTGTCGCTGGCTCTGCACCTACAATATCACGTGCAGTCACTAAGTTGATTGTACCTAAAGGTCAGTACGTTATTACAAGACCATTGCTAATCTATCAGAAGGATGGTTTCGTATTAGAAGGTGTCGGCTCTATGGGTTCACAATTCATTGTAGGCTCTGACATGAGATGGTTTGAATATCCTGAGCGCTGGAAGGCGCTAGCAGAATATCAAGAGCTTAAAGATAACCCTGCAATCTTCCAAGTAGCGAGACGGAGAGCAACTGGTGTTGGCGACCCTGCAACTGGTATTGAGAACACAGGTTATTCTCAAGCAGGTGCTAACGAAGCGGCTTGGTATTATACCTTCAAAGGTATCGGATTCTACGGTCGTAACTCTATCCATCGTAAGAAGATTCACGGCATCTATGCACGTGAGATAGCTAAGCTTAAGATAGATGAATTGTATGGGGAAGGTATGAACATAGTGCTGTCATTCCGAACATATGCATCTCAGATTTGCAATGTTAATACATTTGACAACAAGAAACCTTTAAATATCGTCTCTGGTACTTCTTGTAGTTTAGATAATATTGGTAGCGCATGGGATGATGAGGGATATACTATTCATACAATCTATTCTACTTACTCAAATATGGGTATCGACCATTGGGGTAAGGGCAGCTATGCATACGATGTTGGCCGTATCTCCACTAGTATGATTGGCTGTGGTTCGGAGAACGGATTTGGTGGGATACTCAGAGTGCAAGGAACACCCGCTGATGAAGATAAACAACAGAACCGTATAGGTCTTCACATGGACTCTTGTATCCTTCAAGGTGGTACTATTACTGGTGCTATCAACGATACAGGTCAGAGCAGCGTTTCAGACTTTGGAGTACCTGCGATGATTGATATTGTGAAGTCCAATGTTATCTTTACCAACTGCGCATTCTTATCTGAGATAAATCGAAGTGGTACTATCACAAACCTCGGTGCAAGACTTACTGGCTCTTGCGACATTGTTATCAACCAGTGTGCAGACAAAGCTGTTAGACAGTCACGTACATTGAAGTACTTCTCTGAACACGTTACTAATGTAGGAAGTGTGAAGGAGGGTTATCCTCGTACTAAGTTCAACTCTGACTATGACAGAGACTATGGTGTTGCACTAACAAGTGCTGACACAGACGTTCCTGTTGACTCAACAACTGCCTTCACTTTTGGCAATATTACTTCAGGAAATAAGCATAGTCACTTAAATGGAGATGAGTGGAGCACTAAGACAGGTGGGTTATACAAGTTCACTTGGACTGGTAAAATATCAGGTGACAAGATTAATTATCTAGCAATCCAGTTGTTTAACAGACCACCTAATGTGAACAACGAGGGTACTCCACGTAAGATTCTAATCGACACCAGCACGACTGAGATTGTTAGCTTTTGTATAGAAGAAACATTCGATGTTCTACCAACTGACAAAGTCAGGTTCATTGCATCAAGAGGTACAGGAGGCGGTACATGCACTTTAGTAAAAGATTCTTGCTTGTCATGGGAGCAGCTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6163053d104b94add3a476a0740a8a51674b4f9927496f25f3a27f26590af356
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7280
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50