Protein
View in Explore- Genbank accession
- YP_009821641.1 [GenBank]
- Protein name
- putative tail tubular protein B
- RBP type
-
TSP
- Protein sequence
-
MPVYQGSYKSILGGVSQQVYTDRQLSQVEEQVNMTSDTVRGLRKRPGTRHNRDVSSTNVSVWSLGNFGHLRFYTTNLGWGITTFVVNTLTGYVTAIVETETVQFMGQSSYLVTSNPDDIVFTTVGNTMYVANCSKLPVLLENETRMNPGRRGYFFVLAGAYGKTYSVRIQTSGGAYSASYKTPEANATNAATESTPEYIIGQLSSQLNSQIGGATGLEVVQTDGAYMYLQIDAAHGDLNVSTGTGSTYAIASNTHTVDLTTKLPARLPSQAGGFIMTVGDASFAQYFQWSYGDSRWIEKSAYGSPTGINPSGMPLVFKTTTTQNQHSFAQGTWPGRTAGDDNNNPIPAFTDANGVGITGLASFQGRLIIFSGPYICMGSSNKDDRQNFFRTTVTQVLDDDRIEFTASSFAGASFRYGVPFNSDLILASEEHQAVIPGRNQILTPNNATAVLTSTYQMDTGVAPTTSGRSLYYSYPRSNSSFSVKEMVPSGYTDLQYVSQDVTDHLPTYLEGANSYISASTTNNIVVFGSNSERSTLYINEYLWSGDEKVLSSWHRWEVYGTIHAAWFVREVLVMLVEQNGHMNMLTLSMRDSPDPTDPARFLPAVDYAQLMTVTNPATDTSYIQFAADGVQKALWDIIASRYTADGNTDFLTTVVPSGSYIGAEVGVLSVDTTNRRLYLQPSYGSTSLYVGLRFTATFSPTPPRVFNQDGSYMDVNKMIIMDYNFTLRYTSLFNITASDRGAYSALNIISSPIRYTSQELGLESAMLAKRAHLKVRMGLEVESSSMVVTSNTAGDLNIQGLGYYIKFYNRTRRI
- Physico‐chemical
properties -
protein length: 814 AA molecular weight: 89319,59430 Da isoelectric point: 5,56712 aromaticity: 0,11057 hydropathy: -0,23059
Domains
Domains [InterPro]
IPR058003
TTP
1–814
TTP
1–814
DC_0058
STR
1–814
STR
1–814
1
814
Architecture
STR 1-814
Legend:
ATT
STR
RBD
CBM
LEC
ENZ
CHP
LNK
TAS
TTP
UNK
Unmapped
Tail Spike Domain Segmentation
Tail Spike Domain Segmentation
This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.
Domain Layout
1
814
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 597 | 597 | 0,7244 |
| Central domain | 598 | 796 | 200 | 0,2501 |
| C-terminal | 797 | 814 | 17 | 0,8524 |
Legend:
N-terminal
Central domain
C-terminal
3D Structure with Domain Coloring
The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).
Domain Coloring
N-terminal
1-597
1-597
Central
598-796
598-796
C-terminal
797-814
797-814
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
Escherichia phage Lidtsur [NCBI] |
2562235 | Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes |
| Host |
Escherichia coli str. K-12 substr. MG1655 [NCBI] |
511145 | Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia |
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
YP_009821641.1
[NCBI]
Genbank nucleotide accession
NC_048177
[NCBI]
CDS location
range 25128 -> 27572
strand +
strand +
CDS
ATGCCAGTCTATCAAGGCTCTTACAAATCCATCCTCGGCGGCGTCAGCCAGCAGGTCTATACTGACCGTCAGCTATCGCAGGTTGAGGAACAGGTCAACATGACCTCTGATACCGTGCGTGGCCTCCGCAAACGCCCCGGCACCCGCCATAACCGCGACGTAAGCTCGACTAACGTTAGCGTGTGGAGCCTTGGGAATTTTGGCCACCTCCGCTTTTACACAACCAACTTAGGCTGGGGCATCACCACGTTCGTAGTCAATACGCTGACTGGTTATGTCACTGCCATCGTAGAGACTGAAACAGTCCAGTTCATGGGCCAGTCCTCGTATCTTGTTACCTCCAACCCTGACGACATTGTGTTCACGACTGTCGGCAACACCATGTACGTTGCTAACTGTTCCAAGCTGCCTGTGCTGCTTGAGAACGAGACTCGAATGAATCCCGGTCGCCGGGGTTACTTTTTCGTCTTGGCTGGTGCATACGGCAAGACCTACTCCGTACGAATCCAGACCAGTGGCGGGGCTTACTCCGCCTCATACAAGACTCCAGAGGCCAACGCCACCAACGCCGCCACAGAGTCCACCCCTGAGTACATCATTGGCCAGTTATCCTCTCAGCTTAACAGCCAGATTGGTGGGGCTACCGGGCTTGAGGTGGTGCAAACTGACGGCGCTTACATGTACCTGCAAATTGATGCAGCACATGGCGACCTCAACGTGTCTACTGGTACAGGCTCCACGTATGCAATAGCGTCGAATACCCACACAGTAGACCTCACCACCAAGTTGCCTGCCCGTCTGCCATCTCAGGCTGGTGGATTCATCATGACAGTTGGTGACGCCAGTTTCGCCCAATACTTCCAGTGGAGTTACGGAGACTCTCGCTGGATTGAGAAGAGTGCTTATGGCTCGCCGACAGGGATTAACCCAAGCGGTATGCCGCTCGTGTTCAAGACCACCACTACTCAGAACCAGCATTCGTTTGCACAGGGTACGTGGCCGGGGCGAACCGCTGGAGACGACAACAACAACCCAATCCCAGCATTCACTGATGCCAATGGCGTCGGGATTACTGGGCTGGCGTCGTTCCAAGGCCGCCTGATTATCTTCTCCGGGCCGTACATCTGCATGGGTTCCAGCAATAAGGATGACCGTCAGAACTTCTTCCGCACCACTGTTACGCAGGTGCTGGACGACGACCGTATTGAGTTCACTGCATCCAGCTTCGCCGGGGCATCGTTCCGGTATGGGGTGCCGTTCAACTCTGACCTGATTCTGGCGAGTGAGGAACACCAAGCGGTAATCCCCGGACGCAACCAGATTCTGACGCCGAACAACGCCACCGCAGTGCTGACTTCGACGTATCAGATGGACACTGGAGTAGCGCCTACTACCTCTGGCCGCAGCCTGTATTACTCGTACCCGCGCTCCAATAGCTCGTTCTCCGTGAAAGAGATGGTGCCGTCTGGCTACACCGACTTGCAGTATGTGAGTCAGGATGTGACAGACCACCTGCCGACCTATCTGGAGGGTGCGAACAGCTACATCTCTGCCAGCACCACGAACAACATTGTTGTGTTCGGCTCCAACTCTGAGCGGTCTACTCTGTACATCAACGAGTACCTGTGGTCTGGTGATGAGAAGGTGCTGTCTTCTTGGCATCGCTGGGAAGTGTATGGCACTATCCATGCTGCATGGTTCGTGCGCGAGGTGCTGGTGATGCTGGTCGAGCAGAATGGACACATGAACATGCTCACGCTGTCCATGCGAGATTCCCCTGACCCGACCGACCCGGCGCGATTCCTGCCCGCTGTTGACTATGCTCAACTGATGACAGTAACCAACCCGGCCACTGATACCTCATACATCCAGTTCGCTGCTGATGGGGTGCAGAAAGCGCTGTGGGATATCATTGCCTCCCGGTACACGGCTGATGGAAATACTGATTTCCTCACAACTGTGGTGCCATCCGGCAGCTACATCGGTGCTGAGGTGGGCGTGCTGTCTGTGGACACTACCAATCGCCGACTGTACTTGCAGCCATCTTACGGCAGCACATCGCTGTATGTTGGGCTTCGGTTCACTGCGACGTTCAGCCCGACGCCACCACGAGTGTTCAACCAAGACGGCTCGTACATGGATGTGAACAAGATGATTATCATGGACTACAACTTCACGTTGCGGTACACCAGCTTGTTCAACATCACAGCCAGTGACCGGGGAGCGTACTCTGCGCTCAACATCATCTCCAGCCCGATTCGGTACACGAGTCAGGAGCTTGGCCTTGAGTCTGCTATGCTGGCGAAGCGTGCGCACCTGAAAGTCCGTATGGGCCTTGAGGTCGAGTCGAGCAGCATGGTTGTCACATCGAACACGGCAGGCGACCTGAACATTCAGGGTTTGGGTTACTACATCAAGTTCTACAATCGCACTCGGAGAATCTAA
Genome Context
Genome Context
Tertiary structure
PDB ID
2b64519cd374a5335d67e154f1424c1a093ca9635e41f629e9581aa593f90f30
Model Confidence
Very high
pLDDT > 90
pLDDT > 90
High
90 > pLDDT > 70
90 > pLDDT > 70
Low
70 > pLDDT > 50
70 > pLDDT > 50
Very low
pLDDT < 50
pLDDT < 50