Protein

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Genbank accession
XOD32451.1 [GenBank]
Protein name
baseplate wedge protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,76
Protein sequence
MKQNINIGNVVDDGTGDYLRKGGIKINENFDELYYELGDGNVPYSAGAWKTYNASSGQTLTAEWGKSYAINTSSGRVTLQLPKGTVNDYNKVIRARDVFATWNINPVTLVAASGDTIKGSSSSVDINIQFSNLELVYCALGRWEYVKNKQSDKIISSDISNVARKEFLVEAQGQTDFLDVFNGTSYNVKNIRVKHRGNELYYGDVFSENSDFGSPGENEGELVPLDGFNIRLRQPCNIGVTV
Physico‐chemical
properties
protein length:242 AA
molecular weight: 26723,31230 Da
isoelectric point:5,04733
aromaticity:0,10331
hydropathy:-0,43430

Domains

Domains [InterPro]
IPR036240
STR
1–233
IPR036240
IPR008987
ATT
2–150
IPR008987 IPR056391
G3DSA:1.20.5.960
Unmapped
13–41
G3DSA:1.20.5.960 IPR027411
XOD32451.1
1 242
Architecture
ATT
ATT 1-242
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD32451.1
1 242
Domain Start End Length (AA) Confidence
N-terminal 1 241 241 0,9457
Central domain 242 241 1 0,4639
C-terminal 242 242 0 0,0000
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-241
Central
242-241
C-terminal
242-242

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage sb4
[NCBI] 		3387549 Viruses >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD32451.1 [NCBI]
Genbank nucleotide accession
PQ666542 [NCBI]
CDS location
range 89338 -> 90066
strand +
CDS
ATGAAACAAAATATTAATATCGGTAATGTTGTAGATGATGGTACCGGTGACTACCTGCGTAAAGGTGGTATAAAAATAAATGAAAACTTTGATGAACTTTATTATGAGCTTGGTGATGGGAATGTTCCATATTCAGCCGGTGCCTGGAAAACTTATAATGCTTCATCTGGGCAAACACTAACGGCAGAATGGGGGAAATCATACGCTATTAATACTTCGTCTGGGAGAGTAACACTACAACTTCCTAAAGGAACTGTTAATGATTACAACAAGGTAATTAGAGCTAGAGACGTATTCGCTACATGGAACATCAATCCAGTTACTTTAGTAGCTGCTTCCGGAGATACAATTAAAGGGTCGTCATCGTCAGTTGACATTAATATTCAATTTAGTAATTTAGAGCTCGTTTATTGCGCTCTAGGACGCTGGGAGTATGTCAAAAATAAGCAAAGTGATAAAATTATTAGTTCAGATATTAGTAATGTAGCTCGCAAAGAATTTTTAGTTGAAGCTCAAGGACAAACTGACTTTTTAGATGTTTTCAATGGAACTAGTTATAATGTCAAAAACATCAGAGTAAAACATCGTGGTAACGAATTGTATTACGGCGATGTATTTAGCGAAAACAGTGACTTTGGCTCTCCGGGCGAAAATGAAGGCGAATTAGTTCCTCTTGATGGATTTAATATTCGATTAAGACAGCCTTGTAATATTGGTGTCACTGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3a23da4274c4694ad12324920be56bb931621bed8ca7a1ea91e1af7ebb1c0baf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7059
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50