Protein

View in Explore
Genbank accession
AGH06717.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TSP
Evidence RBPdetect2
Probability 0,79
Protein sequence
MSLTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSALRPFKSIQRAFLEVARFSYRVGLSNDEFDAFSIMLYPAEYVIDNRPGKVLYTDVPPIDSNSNLDLTSPNNVLYYYNSVEGGVIVPRGCSLVGTDLRRTKIIPKYVPYPTTYTAKGINTEDDVPPRTAIFKVTGGTYFWQFSFFDGAEEGVYFKPDSTETLSPKFSHHRLTCFEFADGLNPLSKLISDGTVPNTDYSAVPNILERTDLDIYYQKVSKAFATIPDTSGDPTTDQIQARVEENRIVGPISDEYRVLQITRNGQTATAVTVDEFDNPRDHGFSVGVNINVSGVTGSTGPQSEVDATVFNGSFTVTSTPTGSTFTYQLASVPSGNAVGSNVTVKTEIDTVDSASPYAFNLSLRSVWGMNGMHANGAKATGFKSMVVAQFTGLSLQKDDRAFVRYNASTGNYDVATAGDGAHLDGFAEYRKGWGHEHIKCSNDSFIQAVSVFAVGYFGHFTAESGADMSITNSNSNFGNTALRSAGFKAKAFSKDKAAEITHIIPPKALNVISTTATGASGSPNITLANDGSINGVIEGMTVSGTNLAAGATVVSFNTNTRVITLSGNNTAAVDTNIIFGEETSVNWVNVDIQRTKVINSALSGQGGIAGSRLYLYGYVTEASPPTTKVQGFAIGSRQDGTGVDAIPDKLNVLLVANGASSATVQTAKISPYGPDVSNKAAGDTGSPLQYDSATYTINGQAGSVGGWYLSVDPNDNQIYTTLSTNSQYNNVNFTPTTFIKRIPDPRDLQDRTYRVRMVIDKDKTNPLPRDPLSGYVVQPLNSDTTSYNLNRTFYIYDIEVVQKFERGVKDGIYYITLLCASIAPSTSNFNDRKFSQNVNEVYPTFDRDNPVADPVAAISVADNETIGLVNATDGANPTPNKDPKLSITKEAIKFLLTDTGWTQPGTTPNYDSVNGRLSNVELTARAGNEETRKINIRENNDGTVAPINVEFRRHSILRSGNHTFEYLGFGPGNYSTAFPQTQVETLSADQVKFSQSIKEEAGVAFYSGLNSNGDLFIGNQIINPVTGQITNEDIAQLNVVGEENTTIQTFSELVLTDKLTVIGGASNQLESIFAGPVTFQAQTSFTNNLTAKKITYNNQDGTVIKQTLLAPADANGQPSFAAITGYDTPGNGDLVYNINWTPGQSLGWIYYNGTWHEFGLTDTGDINIDTFNNEQHIGIGTAAVSSFRVGILGSAKVDGDLVVTGRGGVGADKYVTKTYTGDGTTLTFAVTTYSGGIQHSDDSLLVFLNGVAQIAGTNYTVDANGANVVFSSGDAPQSTDTVHILELPI
Physico‐chemical
properties
protein length:1321 AA
molecular weight: 142057,41320 Da
isoelectric point:4,85583
aromaticity:0,09387
hydropathy:-0,26684

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH06717.1
1 1321
Domain Start End Length (AA) Confidence
N-terminal 1 91 91 0,9046
Central domain 92 310 220 0,9546
C-terminal 311 1321 1010 0,1013
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-91
Central
92-310
C-terminal
311-1321

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIM2 R21_2007
[NCBI] 		869661 Uroviricota > Caudoviricetes > Pantevenvirales > Nerrivikvirus > Nerrivikvirus srim2
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH06717.1 [NCBI]
Genbank nucleotide accession
HQ317290.1 [NCBI]
CDS location
range 22593 -> 26558
strand +
CDS
ATGTCTCTAACTAGACTTAAGAATATTATTACGTCCCGCACGGGACGTATTATTTACGTTAACCCTGACGACTTTGATGCTTCTGATGCTATTGACAACAGAGGCAACTCAGCATTGCGTCCGTTTAAGTCTATTCAAAGAGCATTTCTTGAAGTTGCTAGATTTTCGTATCGTGTTGGTCTGAGTAATGACGAATTCGATGCGTTCAGTATCATGCTCTACCCTGCAGAGTATGTGATCGATAACCGTCCTGGTAAAGTTCTTTATACTGATGTCCCTCCTATTGATTCTAACTCTAATCTGGACCTGACTTCACCTAATAATGTTTTGTATTATTACAACTCAGTAGAAGGAGGAGTCATTGTTCCCAGAGGTTGTTCACTGGTTGGCACCGACTTACGTCGTACCAAGATTATTCCTAAGTACGTTCCTTATCCTACGACATATACTGCGAAGGGAATCAACACAGAGGATGATGTTCCTCCCCGCACCGCAATCTTCAAGGTCACAGGTGGTACATACTTCTGGCAGTTCTCCTTCTTCGATGGTGCTGAGGAAGGTGTATACTTCAAACCCGATAGCACTGAAACTCTTTCCCCCAAGTTCTCACACCATAGACTAACTTGCTTTGAGTTTGCTGATGGTCTCAATCCTCTTTCCAAGTTAATCTCTGACGGCACTGTTCCTAACACAGATTATTCTGCTGTGCCTAACATTCTAGAGAGAACTGACCTAGACATTTACTACCAGAAAGTATCGAAGGCATTCGCAACTATTCCTGATACATCTGGTGATCCTACTACTGACCAGATTCAGGCAAGGGTCGAAGAAAACAGAATCGTTGGTCCTATTTCCGATGAATACAGAGTCCTTCAGATCACAAGAAATGGTCAGACAGCAACGGCAGTTACTGTTGATGAGTTTGATAACCCCAGAGACCATGGATTTAGTGTTGGCGTCAACATTAACGTTTCAGGTGTTACTGGATCAACTGGACCGCAATCCGAAGTTGATGCAACAGTTTTTAACGGATCTTTCACCGTCACTTCGACGCCAACTGGTAGCACATTTACTTACCAGTTAGCATCTGTACCATCAGGTAATGCTGTTGGTTCTAATGTTACTGTTAAGACTGAAATTGATACTGTTGACTCTGCATCTCCATATGCATTCAACCTGTCACTGAGAAGTGTTTGGGGTATGAATGGTATGCACGCGAACGGTGCTAAGGCAACTGGTTTCAAATCGATGGTTGTTGCACAGTTCACGGGTCTATCTCTACAGAAAGATGATAGAGCGTTTGTAAGATATAATGCTTCTACTGGTAACTATGATGTAGCAACTGCTGGTGATGGTGCTCACCTGGATGGTTTTGCTGAGTATCGTAAAGGATGGGGACATGAGCACATTAAGTGTTCTAATGACTCCTTCATTCAGGCGGTTTCGGTGTTCGCTGTTGGATACTTCGGTCACTTCACTGCTGAAAGTGGTGCTGACATGTCAATCACCAACTCCAACAGTAACTTTGGAAACACTGCGTTAAGATCTGCTGGATTTAAGGCAAAAGCATTCTCCAAGGATAAAGCAGCAGAGATTACTCATATCATTCCACCTAAGGCACTGAACGTTATTTCGACAACTGCAACAGGTGCTTCAGGTTCGCCAAATATCACACTTGCTAATGATGGTAGCATCAACGGTGTTATCGAAGGTATGACAGTTTCTGGAACTAATCTTGCTGCTGGTGCTACTGTTGTTTCCTTCAACACTAACACTAGAGTTATCACACTGTCTGGAAATAATACAGCAGCAGTTGACACTAACATCATCTTTGGTGAAGAAACATCTGTCAACTGGGTTAACGTTGATATTCAACGCACTAAGGTAATCAACTCTGCACTTTCTGGTCAGGGTGGTATTGCTGGTTCTAGACTTTATCTCTATGGATATGTCACGGAAGCATCTCCTCCAACAACAAAGGTTCAAGGTTTTGCTATTGGATCACGTCAAGATGGCACAGGTGTTGATGCTATACCAGACAAACTGAATGTACTTTTGGTTGCTAATGGTGCATCTTCTGCAACAGTTCAGACTGCTAAGATTTCACCTTATGGTCCTGATGTTTCCAACAAAGCAGCAGGTGATACTGGTTCACCTCTGCAATATGATAGTGCAACATACACTATCAATGGTCAAGCAGGTTCCGTTGGTGGTTGGTATCTGAGTGTAGATCCTAACGATAATCAAATCTACACAACTCTTTCTACCAACTCACAGTACAACAACGTAAACTTCACCCCTACAACTTTCATTAAGAGGATTCCTGACCCTCGTGACCTGCAGGATAGAACATATCGTGTCCGCATGGTTATCGATAAGGATAAGACTAATCCTCTGCCTCGTGATCCTCTCAGCGGTTATGTTGTACAACCTCTGAATAGTGACACTACAAGTTACAATCTGAACAGAACATTCTATATCTACGATATCGAAGTTGTTCAGAAATTCGAGAGAGGCGTTAAAGATGGCATCTACTACATTACCTTGCTTTGTGCATCTATTGCACCTAGCACTTCTAACTTCAACGACAGGAAGTTCTCTCAAAACGTCAACGAAGTCTATCCTACGTTTGACAGAGACAACCCTGTTGCTGACCCTGTTGCTGCGATTTCCGTCGCTGACAACGAAACTATCGGTCTTGTAAATGCAACTGATGGTGCTAACCCTACACCCAACAAAGATCCCAAACTGTCTATTACTAAAGAAGCGATTAAGTTCCTTCTGACTGATACTGGTTGGACACAACCAGGTACAACACCCAACTATGACTCTGTTAATGGAAGACTATCTAATGTCGAACTAACTGCACGTGCTGGAAATGAAGAAACTAGGAAGATCAACATCCGCGAAAACAATGATGGGACTGTCGCACCTATCAATGTTGAGTTCAGGAGGCACTCGATCCTTAGATCTGGTAACCATACGTTTGAGTATCTTGGTTTCGGTCCTGGTAACTATTCAACTGCATTCCCTCAAACTCAGGTAGAAACTCTGAGTGCAGATCAGGTTAAGTTCTCTCAGTCGATTAAAGAAGAAGCAGGTGTTGCATTCTACTCTGGTCTGAACTCTAACGGTGACCTGTTTATTGGTAACCAGATTATCAACCCTGTTACAGGTCAGATTACTAATGAAGATATTGCACAGTTGAATGTTGTTGGTGAAGAAAACACTACGATTCAGACATTCTCTGAGTTGGTTCTTACCGACAAACTGACCGTTATTGGTGGTGCATCTAACCAGTTAGAATCTATCTTTGCTGGTCCTGTTACATTCCAAGCACAAACATCCTTTACTAATAATCTTACTGCCAAAAAGATTACTTATAACAACCAGGATGGTACGGTAATCAAGCAAACGTTACTCGCTCCCGCCGATGCAAATGGACAACCAAGTTTTGCTGCTATCACAGGATACGATACACCTGGTAATGGTGATCTTGTTTACAATATCAATTGGACACCTGGGCAGTCGCTTGGTTGGATTTATTACAATGGAACGTGGCACGAGTTTGGTCTCACGGATACTGGTGACATTAATATCGATACTTTCAATAATGAGCAACATATCGGTATTGGTACTGCTGCTGTATCTAGTTTCCGTGTTGGCATCCTCGGAAGCGCCAAAGTAGATGGTGACCTTGTTGTTACTGGACGAGGTGGTGTTGGTGCTGATAAGTATGTCACTAAGACATATACTGGTGACGGCACAACTCTGACATTTGCAGTTACTACCTATAGTGGTGGTATTCAGCATTCTGATGATTCACTGCTGGTATTCCTGAACGGTGTTGCACAGATTGCAGGTACAAACTACACAGTTGACGCTAACGGTGCAAACGTTGTATTCAGTTCTGGTGATGCACCACAATCTACAGATACAGTCCACATTTTAGAACTGCCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
93fb323c03337deea993adea9469626c58545de2c0eaca59cd29654802143437
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3670
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIM2 isolate R21_2007 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2021-02-24 — GenBank