Protein

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Genbank accession
AGH07193.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAREVPGSGAVIKPIFDEVFGVRAVELINSGSGYDPADPPRLTIDGCGTPEREALLYPIIDADSGKIIHVRVLERGRGYDPLRLQIVPTSETPSVLDSFDVNRIWQRHPNSLTRGTFQTAGVPPVKNDRLRIESDNHPKPTWTSAEAVPGGGPLVDRSFDQVFIYRGGKDVPNPGTRTGQNNKSLGILANGGLLHTPEWGTVGNAPINFSIDTVKYDYVKDTNANDVIVDNNIHYYQTSKLINEFKDTNGVFEWGKFEQFVWNIKVEFDNVMLTVNNIDETLSEVEVGRTVTEIGGSARGEIAKIVRNGQNVITRVYLRDVTGTFEDGDLLLGSTGFGMRVNADPITFPNGIFYIDFGADATEFGPFVPGQYYFAPENVRVKRNYLIVWNQDDSTNQPSAMHTLGHPMQFSTTQDGLLTGGTLYYNSTGSSAAPATDYENEFRPIFMMNADETNRIYYYCKVHRYMSGYDGDEGYMILDPTIEDEDIVNNYYVENYYQSDSNDPATIDRSRHVNGHSKVLGMSFDGYPIYGPYGYTTGRTVGKMISAYRLRTTEELPGTREEVVTASTVTYTITVSNNKFYVGGQEEQLLTLKRGKTYAFNQDDSSNDSHYLFFSLSNDGWHGTGDPADIGSEAYLYTGEDSVTYHLEGSAVTKLEYLQGFNTATAREIRITIPVNAPRVAYVFSYLDSGHGIRLVNEGYILGDLTQDYIYDATIGGSSLDPEYNNGPIVNVVGDGSDFFKREVTSNGVRILGAGTVGGQTAVPDAWLEKVARMVELFTDVNGAGINETSQRNLIKTLSGDTGTYHAGLPTIQRVARGAGADYTPNFLTDAGIIAWNLTDLFDTTVQNDMVWYLNSTGDGYGDGDIDAQEVIEHVFHTLHMHGLPADDIKLYPYISSDWNTGDLYAAMEEAYDAGKWDPSGYQSPSNAWKTDADAFEVAAKEYLFLLNFAMFEYTELWDGGSLAPEWTDDMRTQAGIQANNPLGYAFHNTYIAPVISKPSLATIRSIFQDGNTPAQDDPSLAGASGYVVDISSGESLDEFNGKFGPTPEYPNGTYAYFMTEDQSGIPQYPYAIGPKYYSVPLFEGDTVPDLVSSFPTQASGDIILNNDGTISYIKMTKKGDSFFGSAKAVILGGEGTGAKATPVTQTVTGLSLLNQGRSYATPPNLIFEGGGGQGAEGAAQIDTLGKVTSISVVDPGEFYQEPPFILITGGGGIGAKAEAVISQGEITGINVIDPGEGYTSSPNIVFTKLVNLKRKTRARQAFNSTDIYLTGLTKTLGSQDTQIFVTSTDAYAGSGQLIVNKETITYTAKSRGRFTGLTRGVNFKYDQRIILDTGQNDGDGVSTYGFNVGDRVIRRVENAGNKVAKVYDWDPATRELLVTFEVDELAFIDAGIPSTEDAIVQFDAGVANSSGTGVLPHTVIEETDSTIITLTYPIGTIQNRTFEDDDENDGAGDGIPDLLNAGTTFADQINLDGGIYNSLYGIEETQGGQNTTLFQVGDNIKDASIPFKFATVIAAGGLSDGVEHVAQVVLTLGSGSGTFQVNELVTGDVSGVRGTVVSWDNNTKKLTLKDIVPYNLNNVALGVNGFLYEFSHNSTIVDFVITDNGTNYTVAPTITVENTGDIQATGTVNLTAAGDQVASISITNGGYGIPQTVDAGYSLHPTITFTNDVSDTTGSGASAQAVLGGELAVGNGGGSYRIKSIEYVTLVRSDSA
Physico‐chemical
properties
protein length:1713 AA
molecular weight: 185366,56710 Da
isoelectric point:4,47183
aromaticity:0,10158
hydropathy:-0,28628

Domains

Domains [InterPro]
DC_0146
STR
1–1024
DC_0146 IPR025924
DC_0155
STR
993–1713
DC_0155
AGH07193.1
1 1713
Architecture
STR
STR 1-1713
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH07193.1
1 1713
Domain Start End Length (AA) Confidence
N-terminal 1 124 124 0,9789
Central domain 125 902 779 0,5307
C-terminal 903 1713 810 0,0292
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-124
Central
125-902
C-terminal
903-1713

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIM2 R1_1999
[NCBI] 		869662 Uroviricota > Caudoviricetes > Pantevenvirales > Nerrivikvirus > Nerrivikvirus srim2
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH07193.1 [NCBI]
Genbank nucleotide accession
HQ317292 [NCBI]
CDS location
range 75544 -> 80685
strand +
CDS
ATGGCAAGAGAAGTTCCTGGATCTGGCGCAGTCATCAAGCCAATCTTCGATGAAGTTTTTGGTGTACGCGCAGTTGAGTTAATCAACAGTGGTAGTGGGTATGATCCTGCAGATCCACCTAGACTAACTATCGATGGTTGCGGGACGCCTGAACGAGAGGCGTTATTGTATCCTATTATCGACGCAGACTCGGGTAAAATCATTCATGTCCGTGTTCTTGAAAGGGGTAGAGGATACGACCCCTTAAGACTTCAGATTGTTCCTACTTCCGAAACACCCAGTGTTTTAGATTCTTTTGATGTCAATAGAATCTGGCAGAGACATCCTAACTCATTGACTAGAGGCACTTTTCAAACTGCTGGTGTACCTCCTGTTAAGAATGATAGACTTCGTATTGAATCAGATAACCATCCCAAACCTACCTGGACAAGTGCAGAGGCGGTTCCTGGTGGTGGTCCTCTTGTAGATCGTTCTTTTGATCAGGTATTCATTTACAGGGGCGGTAAAGACGTTCCTAATCCTGGAACTAGAACAGGACAAAATAATAAGTCGCTTGGTATTTTAGCGAACGGTGGTCTTCTTCACACTCCCGAATGGGGAACGGTTGGCAATGCTCCAATCAACTTTTCTATTGATACTGTAAAGTATGATTATGTAAAGGATACGAATGCTAATGATGTTATTGTTGATAACAATATTCATTATTATCAAACAAGTAAACTGATAAATGAGTTTAAAGATACCAATGGTGTATTTGAATGGGGTAAGTTTGAGCAGTTTGTCTGGAATATTAAGGTAGAGTTTGATAATGTGATGTTGACAGTCAATAATATTGACGAAACATTATCTGAAGTTGAAGTTGGTAGAACTGTAACTGAAATTGGTGGAAGTGCTCGTGGTGAGATTGCAAAGATTGTTAGGAACGGTCAAAATGTAATCACTAGAGTTTACCTCAGAGACGTTACAGGAACATTTGAAGATGGCGACCTTCTTCTTGGTTCTACAGGATTCGGTATGCGAGTCAATGCAGATCCAATAACGTTCCCTAACGGTATTTTCTATATTGATTTTGGTGCCGATGCTACCGAATTCGGTCCTTTTGTTCCTGGTCAGTATTATTTTGCTCCAGAAAATGTCAGGGTCAAGAGAAACTATCTGATTGTTTGGAATCAGGATGATTCTACAAATCAACCTAGTGCAATGCATACCTTAGGTCATCCAATGCAGTTCAGCACGACTCAAGACGGTCTGCTAACTGGTGGCACTTTGTATTACAACAGCACTGGTTCATCTGCTGCTCCTGCTACTGATTACGAGAACGAGTTCAGACCTATATTCATGATGAATGCGGATGAAACTAACCGCATCTATTACTATTGCAAAGTCCATCGTTACATGTCTGGATATGATGGTGACGAGGGTTATATGATTCTCGATCCCACTATTGAAGATGAGGACATTGTAAATAACTATTATGTTGAGAACTATTATCAATCTGATTCTAACGATCCAGCAACCATTGACCGTTCTAGGCACGTAAACGGTCACTCTAAGGTTCTGGGTATGTCCTTTGATGGATACCCCATCTACGGTCCATATGGATACACTACAGGTAGAACTGTAGGCAAAATGATTAGTGCTTACAGATTAAGAACTACAGAAGAACTTCCTGGTACTAGAGAAGAAGTTGTCACTGCAAGTACGGTAACGTATACTATTACTGTTTCTAATAATAAGTTCTATGTTGGTGGGCAAGAAGAACAACTTTTGACTTTGAAGAGAGGTAAGACATATGCCTTTAATCAAGACGATTCTTCAAATGATAGTCATTATCTGTTCTTCTCTCTGTCGAATGACGGATGGCATGGTACAGGAGATCCTGCGGACATTGGCAGTGAGGCATACTTATATACTGGTGAAGATTCAGTAACTTACCACCTAGAGGGATCTGCAGTTACAAAACTAGAATATCTGCAAGGATTTAATACTGCTACAGCAAGAGAAATCAGAATCACTATTCCTGTGAATGCACCTCGTGTTGCATATGTATTCTCATATCTCGATTCTGGTCATGGTATCCGTCTTGTTAACGAGGGATATATTCTTGGTGATTTGACTCAAGACTACATCTATGATGCTACTATTGGTGGTAGTAGTTTAGATCCAGAATATAACAATGGTCCAATTGTTAATGTTGTTGGTGATGGTAGTGATTTCTTCAAGCGTGAAGTTACATCTAACGGTGTAAGAATACTGGGTGCTGGCACAGTAGGTGGTCAAACAGCAGTTCCCGATGCATGGTTAGAAAAAGTTGCTCGTATGGTTGAACTGTTTACAGATGTAAATGGTGCAGGTATTAACGAAACATCCCAAAGAAACTTAATCAAAACACTAAGTGGCGACACAGGAACTTATCACGCAGGATTACCGACTATACAAAGAGTAGCAAGAGGTGCAGGAGCAGATTACACTCCAAACTTCTTAACTGACGCAGGTATTATTGCTTGGAACTTAACTGACTTATTTGACACCACTGTTCAAAATGACATGGTGTGGTACTTGAACTCAACTGGTGATGGGTATGGCGATGGTGACATTGATGCACAAGAAGTTATTGAACACGTATTCCACACACTTCATATGCACGGGTTACCTGCAGATGATATAAAACTATATCCATATATAAGTTCCGATTGGAACACTGGTGATTTGTATGCCGCAATGGAAGAAGCATATGATGCAGGCAAATGGGATCCATCAGGTTATCAAAGTCCATCAAATGCTTGGAAAACAGATGCAGATGCATTTGAAGTAGCCGCAAAAGAATACTTGTTCCTACTAAACTTTGCTATGTTTGAATACACAGAATTATGGGACGGTGGAAGTCTTGCTCCAGAATGGACAGACGACATGCGTACCCAAGCAGGTATTCAAGCAAATAACCCATTAGGTTATGCATTCCATAACACATACATTGCTCCAGTTATTAGTAAACCATCACTTGCTACTATTAGAAGCATATTCCAAGATGGTAATACACCAGCACAAGACGATCCAAGTTTAGCAGGTGCGTCAGGATATGTTGTTGACATTTCTTCTGGGGAATCTCTTGATGAGTTCAATGGTAAGTTTGGACCCACTCCTGAGTATCCTAATGGTACATATGCATACTTCATGACTGAGGATCAATCTGGTATTCCTCAGTATCCATATGCGATTGGTCCTAAGTATTACAGCGTTCCTTTATTTGAAGGTGATACTGTTCCCGATCTTGTATCTTCTTTCCCAACACAGGCATCTGGTGACATCATTCTGAATAATGATGGAACGATTTCATACATTAAGATGACGAAGAAGGGTGACAGTTTCTTCGGTTCTGCAAAAGCAGTTATTCTTGGTGGTGAAGGAACAGGGGCAAAAGCAACTCCCGTAACTCAAACTGTCACTGGTCTGTCTCTGCTAAATCAGGGTAGAAGTTATGCTACACCACCTAACCTCATCTTTGAAGGTGGTGGTGGACAAGGTGCTGAGGGTGCTGCTCAAATCGATACTCTTGGTAAGGTTACCTCTATCAGTGTGGTAGATCCTGGTGAGTTCTATCAAGAACCTCCTTTTATTCTCATCACTGGTGGTGGTGGCATTGGTGCTAAGGCAGAAGCAGTCATTAGTCAAGGTGAGATTACTGGGATTAATGTTATTGACCCTGGTGAAGGATACACCTCTTCTCCAAATATTGTCTTCACAAAACTCGTTAATCTCAAACGTAAGACAAGAGCACGTCAAGCATTTAACTCAACTGACATCTATCTTACTGGTCTTACCAAAACTCTTGGATCTCAAGACACGCAGATTTTTGTCACATCTACTGATGCATATGCTGGTTCTGGTCAACTTATCGTTAATAAAGAGACCATTACATATACTGCGAAGAGCAGGGGTAGATTTACAGGACTAACTAGAGGTGTAAACTTCAAATATGATCAGAGAATCATTCTTGACACAGGACAGAACGATGGTGATGGAGTTTCCACTTACGGATTTAATGTTGGTGACCGAGTAATCCGTAGGGTTGAGAATGCGGGCAACAAAGTTGCTAAAGTCTATGACTGGGATCCTGCGACAAGAGAACTGTTAGTTACGTTTGAAGTCGATGAACTGGCATTTATTGATGCTGGTATTCCTTCTACTGAAGATGCAATTGTTCAGTTTGATGCTGGCGTTGCTAATAGTTCTGGTACTGGTGTTCTTCCTCATACAGTTATCGAAGAAACCGATTCCACTATTATTACTTTGACATATCCTATCGGAACTATTCAAAATAGAACCTTTGAGGATGATGATGAAAATGATGGTGCTGGTGATGGTATTCCCGATCTTCTCAATGCTGGAACTACCTTTGCCGATCAAATCAATCTTGATGGTGGTATCTATAACTCTCTATATGGTATTGAAGAGACACAAGGTGGTCAGAATACTACATTGTTCCAAGTTGGCGATAATATCAAAGACGCATCTATACCATTCAAGTTTGCAACCGTCATTGCGGCAGGTGGACTGAGTGATGGCGTTGAGCACGTTGCACAAGTTGTTCTAACTCTTGGTAGTGGTAGTGGTACTTTCCAAGTAAATGAACTTGTCACTGGTGATGTTTCTGGTGTTAGAGGAACAGTTGTTTCTTGGGATAATAACACTAAGAAACTTACACTTAAGGATATTGTTCCTTATAACTTGAATAACGTTGCACTTGGTGTCAACGGATTCCTGTATGAATTCTCTCATAATAGCACTATCGTTGATTTTGTTATTACAGATAATGGAACAAACTATACTGTTGCTCCAACTATTACAGTTGAAAATACTGGAGATATTCAGGCAACTGGAACAGTAAATCTTACTGCTGCAGGTGACCAGGTTGCGTCGATTTCAATCACAAATGGAGGATACGGAATCCCTCAAACAGTTGATGCTGGTTACAGTCTCCATCCTACGATCACCTTTACTAATGATGTATCCGATACAACTGGATCTGGTGCATCTGCTCAGGCAGTTCTTGGCGGAGAACTGGCAGTTGGTAACGGTGGCGGTTCGTATAGAATCAAGAGCATTGAGTATGTGACATTGGTCCGCTCAGATTCCGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2f3b9852dc92fe39f4081f148668392197f70634f50e458e854952632a7de097
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7706
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIM2 isolate R1_1999 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank