Protein

View in Explore
Genbank accession
AGH06967.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MRKIESQMCAAVQSSSNWSLANTTVSFNEESGTSIVRLHGNKIAEIDDSSMTIFDGGWQSTTTKSRLNALIDTFCNGVTDGVFQKNYQWFIKDNNVIREFNNGYIFA
Physico‐chemical
properties
protein length:107 AA
molecular weight: 12014,21840 Da
isoelectric point:5,20562
aromaticity:0,11215
hydropathy:-0,34766

Domains

Domains [InterPro]
IPR057004
STR
1–107
IPR057004
AGH06967.1
1 107
Architecture
STR
STR 1-107
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH06967.1
1 107
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0007
Central domain 11 96 87 0,3148
C-terminal 97 107 10 0,7591
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-96
C-terminal
97-107

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIM2 R9_2006
[NCBI] 		869663 Uroviricota > Caudoviricetes > Pantevenvirales > Nerrivikvirus > Nerrivikvirus srim2
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH06967.1 [NCBI]
Genbank nucleotide accession
HQ317291 [NCBI]
CDS location
range 46980 -> 47303
strand +
CDS
ATGCGTAAGATTGAATCTCAAATGTGTGCCGCTGTTCAGTCCTCCTCTAACTGGTCATTGGCAAACACGACAGTTTCATTTAACGAAGAATCTGGCACCTCTATTGTTCGTCTTCACGGTAACAAGATTGCTGAGATTGATGATTCTTCCATGACAATCTTTGATGGTGGTTGGCAGTCTACCACCACAAAATCACGCCTCAATGCACTCATCGACACATTCTGCAATGGTGTTACTGATGGTGTGTTCCAGAAAAACTATCAGTGGTTCATCAAAGATAACAACGTGATTCGTGAGTTTAACAACGGTTATATCTTTGCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6cca3408aa6368555de925fcd00d736f81f604c0e3c22defc010b82ed521d90e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5034
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIM2 isolate R9_2006 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2021-02-24 — GenBank