Protein

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Genbank accession
QBX27697.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MVYEFESLQRRVDEAVANPRYYTDFTGVDPTTLHELSQLLTFVRTKGSGAAFREAVAQLFERYILTLSSQGNANLEVSMARGTFKTLKDRIEALSLADSSNYTDLLADISQIATDLTAAKTQMNNIVANAGNGNSSEVTDIRLGFDGKTDTTAGVAVRRQFTDLNRRAFTMFQLKNEDFTPKAVNTGAGRLAFGNYATYYGNVAVKKINKDMQLYKNIAGYRTIIYYFKQDLSYISAETLGDTAKTGIYTPVIPADAYYFALSIGEIAWDVSNSTVIENINIFSRLPLGDIEYIPQHERFDYSLVNPAIADTTLVNSPTWYTLLNSKIWKITSSTLLKVRVVWAIKGKNVAYAEYTNSADNPEINIVKPNFPCDVYLSISYPTGELMTVAKVAEIIGTDKFSNYENYELIPGDFTLFNLTGPMCYRFVENSTRKVLSKPIFFDDHNYKWLSQKDSYGTAINSNDFELSNTTKETTRFIYHPNKFIMLRSSDNFYLTRENRIALRDFPSIIGHRCFMSEAPENTIEALKKAHENGYRAVETDVKKTSDGVLVIHHDDTLLRMCGVDKKIADITLTELKSYPIISGSHIEDYQNVKIPTVTEFLNAAKMLDIIVFMDGLHLFPIDEVTKAIEGYNVYPRLSGYNASTIYNGITHFLGNELVSQPLSSNYPITIFTSWQGDAIKEEINKIRKLNLRSAYFLDAGQEKDLAEINKVGFDGLITNSYGKNMI
Physico‐chemical
properties
protein length:727 AA
molecular weight: 81892,71960 Da
isoelectric point:5,64482
aromaticity:0,11279
hydropathy:-0,23521

Domains

Domains [InterPro]
DC_0719
STR
9–716
DC_0719
IPR017946
STR
500–725
IPR017946
PTHR46320
Unmapped
504–615
PTHR46320
IPR017946
STR
506–720
IPR017946
IPR030395
ENZ
507–727
IPR030395
IPR030395
ENZ
512–604
IPR030395
PS50007
ENZ
521–558
PS50007
QBX27697.1
1 727
Architecture
STR
STR 9-727
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX27697.1
1 727
Domain Start End Length (AA) Confidence
N-terminal 1 166 166 0,9950
Central domain 167 372 207 0,6098
C-terminal 373 727 354 0,2429
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-166
Central
167-372
C-terminal
373-727

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan406
[NCBI] 		2548152 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus parauberis
[NCBI] 		1348 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX27697.1 [NCBI]
Genbank nucleotide accession
MK448930 [NCBI]
CDS location
range 32711 -> 34894
strand +
CDS
ATGGTTTATGAATTTGAATCGTTACAAAGACGAGTTGATGAAGCTGTTGCCAATCCTCGTTATTATACTGACTTTACAGGAGTTGACCCGACAACATTACACGAATTATCACAATTACTAACTTTTGTTAGAACGAAAGGAAGCGGAGCAGCCTTTCGTGAAGCTGTAGCACAACTATTTGAACGATACATATTGACGCTTTCAAGCCAAGGAAACGCAAACTTAGAAGTTTCTATGGCTCGTGGGACTTTCAAAACCTTAAAAGATCGCATAGAAGCTCTATCTCTTGCCGATTCGTCCAATTACACTGACTTGCTTGCCGATATCTCACAAATTGCGACTGATTTAACTGCCGCTAAAACACAAATGAATAACATTGTAGCTAATGCAGGCAATGGCAATTCGTCAGAAGTCACTGATATAAGACTTGGTTTTGACGGAAAGACAGATACTACAGCAGGGGTAGCCGTAAGGCGTCAATTCACTGATTTAAACAGAAGGGCGTTTACAATGTTTCAATTAAAAAATGAAGATTTTACACCAAAGGCAGTAAATACAGGAGCTGGTAGATTAGCTTTTGGGAACTACGCAACTTATTATGGAAATGTTGCAGTTAAAAAAATAAATAAAGATATGCAGTTATATAAAAATATAGCTGGTTATCGGACTATTATTTATTACTTTAAACAAGATTTAAGTTATATTTCAGCAGAAACATTAGGGGATACTGCAAAAACTGGCATATATACACCAGTTATCCCTGCTGATGCATACTATTTTGCTTTGTCAATTGGCGAGATAGCTTGGGATGTTTCAAACTCAACTGTGATTGAAAATATTAATATTTTCTCAAGACTTCCTCTTGGTGATATTGAGTATATTCCACAGCACGAGCGTTTTGATTATAGTTTAGTAAATCCTGCAATTGCTGATACAACTTTAGTAAACTCGCCGACGTGGTATACATTACTTAACTCAAAAATTTGGAAAATCACTTCTTCCACTTTATTAAAGGTGCGTGTTGTTTGGGCAATAAAAGGTAAAAATGTTGCTTATGCAGAATACACAAACTCGGCAGACAATCCTGAGATTAATATTGTCAAACCTAATTTTCCTTGTGATGTTTATCTTTCTATCTCTTATCCAACAGGAGAATTGATGACAGTCGCAAAAGTTGCTGAAATAATTGGAACTGATAAATTTAGCAATTATGAAAATTATGAATTGATACCTGGTGATTTTACATTGTTTAACTTAACGGGTCCTATGTGTTATCGTTTCGTTGAAAATTCAACACGTAAAGTTCTTTCAAAGCCTATATTTTTTGACGACCATAATTATAAGTGGCTATCCCAAAAAGACAGTTATGGTACTGCAATTAATTCAAATGATTTTGAATTATCAAATACTACAAAAGAGACAACAAGATTTATTTATCATCCTAATAAATTCATTATGTTACGTTCTTCGGATAATTTTTATTTAACAAGAGAAAATCGCATTGCATTGAGAGACTTCCCGTCAATTATCGGACACAGATGTTTTATGAGTGAGGCGCCAGAAAATACCATTGAAGCACTCAAAAAGGCACACGAGAATGGTTATCGTGCTGTTGAAACTGATGTTAAGAAAACATCAGACGGAGTGCTTGTAATTCATCATGACGACACTTTGCTTCGCATGTGCGGAGTTGACAAGAAAATTGCAGATATCACTTTAACTGAGCTAAAATCTTATCCAATCATTTCAGGCTCACACATTGAAGATTATCAAAACGTTAAGATTCCAACGGTAACTGAATTTTTAAATGCTGCAAAAATGCTTGACATAATTGTATTTATGGACGGATTACACCTGTTCCCAATAGATGAAGTAACAAAAGCTATAGAAGGGTATAACGTATATCCTCGTTTATCGGGTTACAATGCCTCAACTATTTACAATGGGATTACTCATTTCCTTGGTAATGAGTTAGTTAGTCAACCGTTATCAAGTAACTATCCAATTACTATTTTTACATCTTGGCAAGGCGATGCAATTAAAGAAGAGATTAACAAGATAAGAAAACTAAATCTAAGAAGTGCATACTTCTTAGATGCTGGCCAAGAAAAAGACTTAGCAGAAATCAACAAAGTTGGATTTGATGGGTTGATAACAAATAGTTACGGGAAAAATATGATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
afb1eae89db94815a6dcade456d67ba5c200f60cf8ea209ac0614d5542800bab
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5873
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank