Protein

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Genbank accession
AXP07710.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MADGINTTSVVCVGGFDSSMNHFNMDTNFPGRASTLLNYEVGLNGGYRRISGFQYFDTNFPTVDSTNAEGRILGVMIYRKTSTNTEEVFAARKQIAGNTYKIYKHSPGLGWVAQVTGLPHLTVSGSYQVHKLRYATISLGGVNYMIVVDGVNKAMVYDGTTWRQLSISGTGTAASPGGNQLIENPAAVAIFKNHVFLSKDSGFDDIVVHSAPQDVFNWTAAAGAGQIPTGFEVCQIKPFRDNLFIFGYNEISRISVSGADFVINDVTKNIGCIAPDSVVEISSDLIFLSPDGIRPISATERNDDYQLASLSKQISYFIKTDIIESYDLEYLDSVVIREKSQFRYFVSGNSVTSVGKGLIGGIRSPDNSNAGEWEYSKLQGIRTSCATSGYIDREEAVLHGDHDGAVYQQENGTSFNGQNIISIYETPFLTFGDAKLRKMVRTVSTYYRLEGSLEMNIGLVFDWGDSRILNPVNFIQTNIADISQYGDGSIYGDGSTYGTVVASPLIQQDIEGSFHSIKLSYTTSDQNPSHSIHGFVIEFTQQARR
Physico‐chemical
properties
protein length:545 AA
molecular weight: 59689,88140 Da
isoelectric point:5,20062
aromaticity:0,10826
hydropathy:-0,17706

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXP07710.1
1 545
Domain Start End Length (AA) Confidence
N-terminal 1 383 383 0,7905
Central domain 384 534 152 0,1259
C-terminal 535 545 10 0,9233
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-383
Central
384-534
C-terminal
535-545

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage phiM6
[NCBI] 		2301527 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sinorhizobium meliloti 1021
[NCBI] 		266834 Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales > Rhizobiaceae > Sinorhizobium > Sinorhizobium meliloti

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXP07710.1 [NCBI]
Genbank nucleotide accession
MH700630 [NCBI]
CDS location
range 15291 -> 16928
strand +
CDS
ATGGCTGACGGTATTAATACAACTTCGGTGGTTTGTGTCGGCGGCTTTGATAGCTCCATGAACCATTTCAACATGGATACTAACTTTCCTGGAAGAGCTTCTACGCTACTCAACTATGAGGTTGGTCTTAATGGTGGTTACAGGCGTATCAGTGGGTTTCAATACTTTGATACTAACTTTCCCACTGTAGATAGTACTAATGCTGAAGGTCGTATCCTTGGTGTTATGATCTATAGGAAGACTTCTACTAATACCGAGGAAGTCTTTGCTGCCCGTAAGCAGATTGCTGGTAACACTTATAAGATTTACAAACATAGCCCCGGTCTCGGATGGGTAGCTCAGGTTACTGGTCTCCCCCATCTGACTGTCTCTGGTTCTTACCAAGTACACAAACTCAGGTATGCTACTATCTCTCTTGGTGGTGTTAACTACATGATCGTAGTTGATGGTGTCAATAAAGCAATGGTGTACGATGGAACTACTTGGCGTCAACTGAGTATCTCTGGAACTGGAACTGCTGCTTCTCCCGGTGGAAATCAGCTCATTGAAAACCCTGCTGCTGTAGCAATCTTTAAGAACCATGTGTTCCTCTCTAAGGACTCTGGTTTTGATGACATCGTAGTCCACAGTGCTCCTCAAGATGTATTCAATTGGACTGCTGCTGCTGGTGCTGGACAAATACCTACAGGCTTTGAAGTCTGTCAGATTAAACCTTTTCGAGATAATCTTTTTATTTTTGGTTACAATGAAATCTCTCGTATCTCTGTCTCTGGTGCTGACTTTGTTATCAATGATGTGACAAAGAATATCGGTTGTATTGCTCCTGACTCTGTTGTTGAAATCTCTAGTGATCTTATCTTCTTGAGTCCTGATGGTATCAGACCTATTAGTGCTACTGAAAGAAACGATGACTACCAGTTGGCTTCACTCTCTAAGCAGATCAGCTATTTTATTAAAACTGACATCATTGAGAGCTATGATCTAGAATATCTTGACTCTGTAGTTATCCGAGAGAAGAGTCAGTTTAGATACTTTGTCTCTGGTAATTCAGTTACTAGCGTAGGTAAAGGCCTTATTGGTGGGATCAGAAGCCCTGACAATAGTAATGCAGGTGAGTGGGAATACTCTAAGCTACAGGGTATCAGGACCTCTTGTGCTACTTCTGGATACATCGATAGGGAAGAGGCAGTCCTTCATGGAGATCATGATGGTGCTGTTTACCAACAAGAAAATGGGACGTCTTTCAATGGACAAAATATTATCAGCATCTATGAAACACCTTTCCTAACCTTTGGTGATGCCAAACTTAGAAAGATGGTTAGAACTGTTAGTACTTACTACCGTCTTGAAGGCTCTCTTGAAATGAACATTGGTCTTGTCTTTGATTGGGGTGATAGCAGAATTCTTAATCCTGTTAACTTCATTCAGACGAATATTGCTGATATCTCTCAGTATGGTGATGGTTCAATTTATGGAGATGGATCAACCTACGGTACTGTAGTTGCTTCCCCTCTTATTCAACAGGATATTGAAGGCTCATTTCATAGTATCAAACTCTCATATACAACCTCTGATCAAAACCCAAGTCATTCTATTCATGGTTTTGTCATAGAATTTACTCAACAGGCAAGGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
97960b0ad68fce20e4669e7f7eaef875ddcb890bd93ac5aad42ffdc3cc870850
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8374
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genome of Sinorhizobium phage phiM6, the first terrestrial phage of a marine group Brewer,T.E., Washburn,B.K., Lynn,J.S. and Jones,K.M. 2018-10-04 — GenBank