Protein

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Genbank accession
WWO60207.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKAVGTMASMIHGVSEQEPHNRQPGKMWESINMFDSPTRGKVRRRGSVYMHHKALPSAVAEAVSTARNMEEYTFFIDGYEYSLIYRSTAGEGGKDYFAQLVAKDTSEFYDIVYENSTWVDNLIAGGVSAIAALGRYVYIAGNTTIPRATSTDVWDTPANYQKLAGWVREGAYSRKYTVQLTHVNGTKHEYSYTTKASAYPELLDTSDIPFWKPGVDPQEPRLDYQKDVADRTNAYEGNRSAWIKEAAEDIVPANIARKLAEVMATAGIAATSMGGCVLVDDPNYNDIKLLDDGNGSLVSYAGKEVSDPQFVTLYHWAGKIVRVRPSGGGDKESYYLKAVPLDGGSGWTKVEWVEAAGVEHKIENVVSQLVIDRAGKTAYVAQNGEGLKSLAPQLGDHPIYKENAVGDGVTAPLPYFFGRKISCLTVFQDRLVVMADNMVNMSRSSDYLNFFRQTVLNIQDNDPIEVFAHGSEGDVIERAVMYDKSLVMFGRLRQYAVDGRTFFSPTNPALNVIGNYEGGTAAQPIATGNFLFFGKKAAERTGLHQMRPGDTPETTVVYEVSQELDTWLTGQPVQLMGMTQPDMVTFRTDASPSIWYLYKYADQDGVGRVLSSWGKFAYSEELGTVAGITHHDGEMLIVTLRSADGKDYWFLDRLSLETKLSDRPHLDSQVDFDKETDWHKAQADKLFAAARKPSEYFLLGSPRVGADDFIEQAPGVESSLVVGSVSPAMFQITNPYMRDNQGMPILAAKLQLVSYSFHLADTGGFRAYVLRPDPQRTMWFEGRVIGHTSNVIGRQPVFSGTRSVSVGKESRACIVELRSEDWQPLRVTGAEWSGQSFMPRARGMY
Physico‐chemical
properties
protein length:846 AA
molecular weight: 93775,36450 Da
isoelectric point:5,52619
aromaticity:0,10638
hydropathy:-0,34515

Domains

Domains [InterPro]
DC_0058
STR
1–846
DC_0058
IPR058003
TTP
139–844
IPR058003
WWO60207.1
1 846
Architecture
STR
STR 1-846
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WWO60207.1
1 846
Domain Start End Length (AA) Confidence
N-terminal 1 190 190 0,7637
Central domain 191 401 212 0,3202
C-terminal 402 846 444 0,3904
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-190
Central
191-401
C-terminal
402-846

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage SB1
[NCBI] 		3117471 Uroviricota > Caudoviricetes > Autographivirales > Gujervirinae > Smasvirus
Host Xanthomonas euvesicatoria
[NCBI] 		456327 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WWO60207.1 [NCBI]
Genbank nucleotide accession
PP079413 [NCBI]
CDS location
range 25616 -> 28156
strand +
CDS
ATGGCGAAGGCAGTAGGCACGATGGCTTCGATGATCCACGGCGTGTCCGAACAGGAACCGCACAATCGTCAGCCCGGCAAGATGTGGGAGAGCATCAACATGTTCGACAGCCCGACTCGCGGTAAGGTCCGCCGTCGCGGCTCCGTCTACATGCACCACAAGGCGCTGCCGTCTGCCGTCGCGGAGGCTGTCAGCACCGCACGGAACATGGAGGAGTACACCTTCTTCATCGACGGCTACGAGTACAGCCTGATCTACCGCAGCACTGCGGGTGAGGGCGGCAAGGATTACTTCGCGCAGCTTGTGGCGAAGGACACCAGCGAGTTCTACGACATCGTGTACGAGAACAGCACGTGGGTGGACAACCTGATTGCCGGTGGCGTGTCCGCAATCGCGGCGCTGGGCCGGTACGTGTACATCGCAGGTAACACCACGATCCCGCGTGCGACCTCGACGGACGTGTGGGATACTCCCGCTAACTACCAGAAACTCGCGGGCTGGGTACGCGAGGGTGCGTACAGCCGGAAGTACACGGTGCAGCTGACACACGTTAACGGTACCAAGCACGAGTATAGCTACACCACCAAGGCGTCCGCGTACCCGGAACTGCTGGACACGTCGGACATCCCGTTCTGGAAGCCCGGCGTTGATCCGCAGGAGCCGCGCCTCGACTACCAGAAGGACGTGGCTGATCGTACCAACGCGTACGAGGGCAATCGCTCCGCATGGATCAAGGAAGCTGCCGAGGACATCGTTCCCGCGAACATCGCACGCAAGCTCGCCGAAGTCATGGCGACCGCAGGTATTGCTGCCACGAGCATGGGCGGCTGTGTGCTGGTGGACGATCCGAACTACAACGACATCAAGTTGCTGGACGACGGCAACGGCTCGCTGGTGTCGTATGCAGGTAAGGAAGTGAGCGACCCGCAGTTCGTCACGCTGTACCACTGGGCTGGTAAGATCGTCCGTGTGCGCCCGAGCGGTGGTGGCGATAAGGAGTCCTACTACCTCAAGGCTGTGCCGCTGGACGGTGGCTCTGGCTGGACCAAGGTGGAGTGGGTGGAAGCTGCCGGTGTCGAACACAAGATCGAGAACGTGGTGTCCCAGCTGGTCATCGACCGGGCAGGCAAGACCGCGTACGTCGCACAGAACGGTGAGGGTTTGAAGTCCCTCGCGCCGCAGCTGGGTGACCACCCGATCTACAAGGAGAACGCTGTCGGTGACGGAGTGACCGCGCCGCTGCCGTACTTCTTCGGTCGCAAGATCAGCTGCCTTACCGTGTTCCAAGATCGCCTCGTGGTGATGGCGGACAACATGGTGAACATGTCCCGCTCGTCGGACTACCTGAACTTCTTCCGGCAGACTGTGCTGAACATTCAGGACAACGATCCCATCGAGGTGTTCGCGCATGGCTCCGAAGGCGACGTGATCGAGCGTGCAGTGATGTACGACAAGAGCCTCGTGATGTTCGGGCGACTGCGGCAGTACGCTGTGGATGGCCGCACGTTCTTCTCCCCGACGAACCCCGCACTGAACGTGATCGGGAACTACGAGGGCGGCACCGCTGCGCAGCCCATCGCTACCGGTAACTTCCTGTTCTTCGGGAAGAAGGCGGCAGAGCGCACGGGCCTGCACCAGATGCGTCCGGGTGACACTCCCGAGACGACTGTGGTTTACGAGGTGTCGCAGGAGTTGGATACGTGGCTGACCGGGCAACCGGTGCAGTTGATGGGAATGACGCAGCCGGACATGGTTACTTTCCGCACGGACGCGTCGCCGTCGATTTGGTACCTGTATAAGTACGCAGACCAAGACGGTGTTGGTCGAGTCCTGTCAAGCTGGGGCAAGTTCGCCTACAGCGAGGAACTCGGTACCGTTGCTGGTATCACCCATCACGACGGCGAGATGCTGATCGTAACGCTGCGGAGCGCAGACGGTAAGGACTACTGGTTCCTCGACCGCCTCTCCCTTGAGACGAAGCTGTCAGATCGGCCACACCTTGACTCGCAGGTTGACTTCGACAAGGAGACTGACTGGCACAAGGCACAGGCTGACAAGCTGTTCGCAGCAGCACGCAAGCCCTCGGAATACTTCCTGCTTGGTTCGCCACGCGTAGGTGCAGACGACTTCATCGAACAGGCACCCGGCGTCGAATCCAGTCTGGTTGTGGGTAGTGTGTCCCCGGCGATGTTCCAGATCACGAACCCGTACATGCGGGACAATCAGGGTATGCCGATCCTCGCCGCGAAGTTGCAGCTGGTTTCGTACAGCTTCCATCTGGCAGACACTGGCGGGTTCCGGGCGTACGTCCTGCGGCCCGATCCGCAGCGTACCATGTGGTTTGAGGGTCGGGTCATCGGGCACACGAGCAACGTCATCGGGCGTCAGCCTGTGTTCAGTGGCACGCGATCCGTGAGCGTAGGCAAGGAGTCCCGAGCCTGCATCGTTGAACTGCGGTCAGAGGATTGGCAGCCGCTCCGCGTCACTGGCGCTGAGTGGTCCGGCCAGTCCTTCATGCCGCGCGCACGAGGGATGTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b9e1bf012aad516d3d3b8060db1347c0af2eb7dcf5264a91ff4e9cb0871a90c8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3082
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel lytic viruses for Xanthomonas sp. and Stenotrophomonas maltophilia Petrzik,K., Brazdova,S., Sovova,L. and Neoralova,M. 2023-07-17 — GenBank