Protein

View in Explore
Genbank accession
AGN51399.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSCSDYPTAQTAKTFNLDAITENERVTLEQDRTNPASDGKTKKTMWGIENDAGNQYESIQNRSDEQYSDINNKYILRNKGDYSTDPLLEFYYEFTDLNGLIYFPIVAPYQVDSTTYPDPSNDPNLRLGQATDDSLVTSTGSTTPRRLDDRFADVVKVKDFGVVGDGITDDSAAFQLAINALTEGSELSINVPKMYMGSGVSRSNMPSGCTIDLNGCIIESDFAGVLITLEGNPNPVAVTTLSTPDYTQPIDSATSNQPNVYIRGVRKFELVDASGIGKHNLIEFHSSRIFSGSKETYEVNRCWEVDGSSLYVDGEALVAFEAGDDVKAYELTDGITIKGGTINHRNTASSTALLVRFFNRPIIKDINFLEVGQNGLHMRYNAEDKITNCNIRRAGEPSSPIAGYAGVYGYGIIHTYSCFSMVSDCSGSGGWHSFEAADGQRDITYSDCVSIADGHGFSTHENCVSAKYIDCHSQARLPSTNRARYVTYKGGTYTKTSPDATFGVNAWRTVFEGVLFTTANDSSAEQTFHAAYIEDSENKPTEPQSFKTEMLVSNCTFDIHKGNISFGNNVLDDLTVTGCTFLCKGGGSVKYLARSNNVLSNIHVFKETPDYYQAQASHNAIFYSPFNGGIFKGNLIDYQMPSLGQSDVLLITTGGNEAIIEGNTFNIRQGCRYLVRCYTDGIDIKMNGNIVRDHGTSLGRCFDGTYNLYSRNNTWHDSGTTDLVYNENYGCTVIEAQGDLFPAYKSPIWRGLPTTSAEVATGCFWNDGGTVKIK
Physico‐chemical
properties
protein length:775 AA
molecular weight: 85058,06350 Da
isoelectric point:4,85964
aromaticity:0,10323
hydropathy:-0,39974

Domains

Domains [InterPro]
DC_0489
STR
1–772
DC_0489
IPR012334
STR
137–535
IPR012334
IPR011050
STR
153–638
IPR011050
AGN51399.1
1 775
Architecture
STR
STR 1-772 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGN51399.1
1 775
Domain Start End Length (AA) Confidence
N-terminal 1 170 170 0,9905
Central domain 171 737 568 0,9908
C-terminal 738 775 37 0,8874
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-170
Central
171-737
C-terminal
738-775

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage jenny 12G5
[NCBI] 		573176 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN51399.1 [NCBI]
Genbank nucleotide accession
HQ632860.1 [NCBI]
CDS location
range 22671 -> 24998
strand +
CDS
ATGAGCTCATGCAGCGACTACCCAACAGCGCAAACCGCCAAGACGTTCAATCTGGATGCTATAACAGAAAATGAGCGTGTAACTTTAGAGCAAGACAGAACCAACCCTGCAAGTGATGGTAAGACAAAAAAAACTATGTGGGGTATTGAGAATGATGCAGGAAATCAATACGAAAGCATCCAGAACCGATCAGATGAGCAATATTCAGACATTAACAATAAGTACATTCTTAGGAATAAGGGTGATTACTCAACAGATCCGCTACTTGAGTTTTACTATGAATTTACTGACCTCAATGGGCTAATTTACTTCCCTATTGTTGCACCGTATCAAGTGGATAGCACAACATATCCAGATCCGTCTAACGACCCTAACCTGAGATTAGGGCAAGCTACAGATGACAGCCTTGTCACATCAACAGGCAGCACAACGCCAAGACGATTGGATGATCGATTTGCTGATGTTGTTAAAGTTAAAGATTTCGGTGTTGTTGGTGATGGGATTACAGACGATAGCGCGGCTTTTCAGCTTGCCATAAACGCACTAACTGAAGGTAGCGAACTTAGTATTAATGTTCCAAAGATGTATATGGGATCAGGTGTGTCAAGGTCAAATATGCCATCAGGATGCACTATAGATCTCAATGGGTGCATAATTGAGTCTGATTTCGCTGGTGTATTAATTACCCTTGAGGGCAACCCCAACCCAGTAGCGGTAACAACATTATCAACGCCAGACTACACACAACCCATAGACTCGGCAACATCAAACCAGCCAAATGTATACATAAGGGGTGTTAGAAAATTCGAATTAGTGGATGCGTCAGGAATAGGCAAACACAACCTAATTGAATTTCACTCATCAAGAATATTTTCGGGATCTAAGGAGACTTATGAGGTCAATAGATGCTGGGAAGTTGACGGAAGCTCGCTTTATGTTGATGGTGAGGCTTTGGTTGCGTTTGAAGCTGGAGATGATGTCAAGGCTTACGAATTAACCGATGGTATCACAATAAAGGGCGGAACCATTAATCACAGAAACACCGCATCATCCACTGCCTTGCTTGTTAGGTTCTTTAATCGCCCAATAATAAAGGATATTAATTTCCTTGAGGTCGGTCAGAATGGGCTGCACATGAGATATAACGCAGAGGATAAGATAACAAACTGTAACATTAGGCGAGCGGGCGAACCTTCCAGCCCTATTGCTGGATATGCTGGAGTATATGGCTACGGGATAATACACACATACAGTTGTTTCTCAATGGTAAGCGATTGCTCTGGATCTGGAGGCTGGCACTCTTTCGAAGCTGCGGATGGACAAAGGGATATAACATATAGCGATTGTGTGTCGATAGCTGATGGTCACGGGTTTTCAACGCATGAGAACTGCGTATCCGCCAAGTACATCGATTGTCATTCACAAGCGAGATTGCCAAGCACAAATAGAGCAAGATACGTTACATATAAAGGCGGGACGTACACCAAGACCTCACCAGATGCCACTTTTGGTGTTAACGCATGGAGAACTGTTTTTGAGGGTGTTTTGTTCACCACCGCCAACGACTCAAGTGCAGAACAGACATTCCACGCTGCATATATTGAGGATAGCGAGAACAAGCCAACCGAACCACAAAGCTTTAAAACGGAGATGCTTGTTAGTAATTGTACGTTTGATATACACAAAGGAAATATATCATTCGGTAATAATGTACTTGATGACTTAACAGTCACTGGCTGCACTTTCTTATGTAAGGGTGGGGGGAGTGTTAAGTATCTAGCCAGAAGCAACAATGTATTATCCAATATCCATGTTTTTAAAGAAACTCCCGACTACTACCAAGCACAAGCAAGCCATAATGCGATTTTTTACAGTCCATTTAATGGTGGGATATTTAAGGGGAATCTTATTGACTATCAAATGCCTAGTCTCGGGCAGTCTGACGTGCTCCTGATTACCACAGGAGGAAACGAGGCTATTATTGAAGGAAACACTTTCAACATAAGACAAGGGTGTCGTTACTTAGTAAGGTGCTACACAGACGGTATAGACATAAAAATGAATGGTAACATTGTGCGCGATCACGGAACATCTCTAGGTCGATGCTTTGACGGCACTTACAACCTATACAGTAGAAATAACACCTGGCACGATAGCGGAACTACTGACTTAGTTTACAATGAAAACTACGGCTGCACAGTAATCGAAGCTCAAGGGGATCTTTTTCCGGCCTACAAATCACCAATATGGAGGGGCTTGCCGACAACTTCCGCTGAGGTTGCCACAGGATGCTTTTGGAATGACGGAGGGACAGTTAAAATAAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
90fc4227e7374580223b822624e5a69d034ec91101af33da812c8e51ee4d2ff6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7754
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage jenny 12G5 Henn,M.R., Polz,M., Kauffman,A.K., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank