Protein

View in Explore
Genbank accession
XXJ63405.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,63
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MSSINIPGFGFTAIPEAPNDGQLYARRDATWELVALSDGVLEAPADGTEYVRKDFQWVNPTYPMYSAVEISFTATDSGIQAINVADAIEELYEKYPENMVFVRSSADLPTPQLLNGVLTHKLEAYEYVIDGDVSIAAAIAFPGPGLNATIRAVNRSILTYTGTAAMFHDLNAQGAIEIGGQTEFQAPNGDMFNLLSGAAGFSFQSSKADRFTNCDSLGEVYCSGLSTFVLNNGTFRNFNQGLIVHDPGFFEINTFFAFGNNQVGCTYFTVEGTSSSGSVNMDTLTVSVGSNETVFNFNPNIQNTIDTINVRDCTLRGPLNGQVFAPGSLTPRDRKFEASGNTLIGNTVHGGLIYLSGNTTQTPVAAINTPTKALGTWTTADISHFNHTVNGALQSEVIRNISSSVDLSVSVQPASGNGVVIRCYLAKNGVPIAGSAKTTTADNGKTANLSISWHVDIAQNDYFELFVENRTGTTPIIVTDATLRIP
Physico‐chemical
properties
protein length:486 AA
molecular weight: 51998,27030 Da
isoelectric point:4,59995
aromaticity:0,09465
hydropathy:-0,04671

Domains

Domains [InterPro]
G3DSA:6.20.230.10
ATT
13–35
G3DSA:6.20.230.10 G3DSA:6.20.230.10
DC_0529
STR
57–486
DC_0529
XXJ63405.1
1 486
Architecture
ATT
ATT
STR
ATT 13-35 | ATT 39-61 | STR 62-486
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XXJ63405.1
1 486
Domain Start End Length (AA) Confidence
N-terminal 1 121 121 0,9547
Central domain 122 348 228 0,9677
C-terminal 349 486 137 0,9751
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-121
Central
122-348
C-terminal
349-486

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage QD01
[NCBI] 		3440539 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXJ63405.1 [NCBI]
Genbank nucleotide accession
PV785814.1 [NCBI]
CDS location
range 230245 -> 231705
strand +
CDS
ATGTCAAGTATTAATATACCGGGCTTCGGGTTTACTGCTATCCCTGAAGCACCAAACGACGGTCAGCTTTACGCTCGTCGTGATGCTACATGGGAGCTTGTAGCTCTATCAGATGGTGTATTAGAAGCACCAGCCGATGGTACTGAGTACGTAAGAAAAGATTTTCAATGGGTAAACCCAACATATCCGATGTATTCAGCCGTTGAGATTTCATTTACGGCAACCGACTCTGGTATTCAGGCAATAAACGTTGCAGATGCTATTGAAGAGCTTTATGAAAAATACCCAGAAAATATGGTATTCGTTCGAAGTTCTGCCGACTTGCCAACACCGCAATTACTAAACGGTGTCCTGACTCACAAACTTGAGGCATATGAATATGTAATTGATGGGGATGTGTCAATAGCCGCAGCAATAGCATTCCCGGGTCCCGGTCTAAATGCTACGATTCGTGCAGTGAACCGTTCTATTTTGACTTACACTGGAACAGCGGCAATGTTTCATGACTTGAACGCACAAGGTGCAATCGAAATTGGTGGTCAAACTGAGTTTCAAGCGCCAAATGGGGATATGTTCAACTTACTATCAGGCGCAGCCGGATTTTCGTTTCAGTCGTCTAAAGCTGACCGTTTTACAAATTGTGATTCGCTAGGTGAAGTGTATTGTAGTGGTCTATCGACGTTTGTATTGAACAATGGTACATTTAGAAACTTCAATCAGGGACTAATTGTTCATGACCCGGGTTTCTTTGAAATCAATACGTTCTTTGCATTCGGTAACAACCAAGTCGGGTGTACATATTTCACAGTTGAGGGAACATCGTCTTCTGGCTCAGTGAACATGGATACATTGACTGTTTCAGTCGGATCAAACGAAACAGTATTCAACTTCAACCCTAATATTCAGAACACAATTGATACGATTAATGTCAGAGATTGCACACTGAGAGGTCCATTGAATGGTCAAGTATTCGCGCCGGGTAGTTTAACACCACGTGACCGCAAATTTGAAGCATCAGGCAATACTCTTATCGGTAACACTGTTCATGGTGGCTTGATTTATCTGAGCGGTAATACGACACAAACACCAGTTGCAGCAATCAATACGCCGACTAAGGCACTTGGCACGTGGACAACTGCTGATATATCTCACTTCAATCACACAGTCAACGGTGCATTACAATCGGAAGTCATACGCAATATATCGAGTAGCGTTGATTTGTCTGTAAGTGTTCAACCGGCTTCTGGTAACGGTGTTGTAATCCGATGCTATCTAGCTAAGAATGGCGTTCCGATTGCAGGTAGTGCAAAAACAACAACTGCTGATAACGGAAAAACGGCAAACTTGTCTATTTCATGGCATGTTGATATAGCACAGAACGATTATTTTGAATTGTTTGTAGAGAACAGAACTGGTACAACACCAATCATCGTCACGGACGCGACATTGCGCATACCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2adcd368678f8b09c57ede8f8288c58c319cf3c1d9c91cf1a4e38905c057ace5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8826
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio natriegens Bacteriophage QD01 Zhu,L. and Zhu,D. 2015-12 — GenBank