Protein

View in Explore
Genbank accession
YP_004323648.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSTIRVDQLRALSDNNFSINVSPNDNFEIQGTIEFDSGASFAVPVGTSAQRPTSPVGGMLRYNSELDRLEFYDGTTWQIFIGGSGAPNGLTEATAVTSVQALYDAGQVTDGLYWINFDGTARQYFVPLNSHPYYIMVGNWGGGADKFFQNASALSGNQLNGVGDNTPTGNWANNGTYGYYRNTGGSDFKYATMDARGIQYRYVKMKFNLYNYHSNDGVTSRNFLGISSAVGDGVTIMRDNSSEGDSQHIFTYYSAISNNDSNGCPSATPTFPSHVRVGTNPGAFMGTRFCCFSREGSSYTTEYVRNFTPYAGDSSGGTAPNAFTGDAWYEMDLGINNPHNLHCVIHSDQDSSNEDTYIKRGVVLVRPA
Physico‐chemical
properties
protein length:368 AA
molecular weight: 40065,24720 Da
isoelectric point:4,90739
aromaticity:0,12772
hydropathy:-0,45462

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004323648.1
1 368
Domain Start End Length (AA) Confidence
N-terminal 1 80 80 0,4539
Central domain 81 279 200 0,0050
C-terminal 280 368 88 0,9956
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-80
Central
81-279
C-terminal
280-368

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage Syn33
[NCBI] 		444878 Uroviricota > Caudoviricetes > Pantevenvirales > Brizovirus > Brizovirus syn33
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004323648.1 [NCBI]
Genbank nucleotide accession
NC_015285 [NCBI]
CDS location
range 28447 -> 29553
strand +
CDS
ATGAGCACTATTAGAGTAGACCAACTTAGAGCATTATCAGATAATAATTTTTCTATTAATGTAAGTCCTAATGATAACTTTGAAATTCAAGGAACTATTGAGTTTGACTCTGGTGCATCCTTTGCAGTGCCTGTAGGAACGAGTGCTCAAAGACCAACATCACCTGTAGGAGGTATGCTGAGATATAATAGTGAACTCGATCGTCTTGAGTTTTATGATGGAACTACTTGGCAAATCTTTATTGGTGGTAGTGGAGCACCAAACGGATTAACAGAAGCAACCGCAGTTACTTCAGTGCAAGCATTATATGATGCTGGGCAAGTAACAGATGGATTGTATTGGATTAACTTTGATGGTACTGCTAGGCAATATTTTGTGCCATTGAATAGTCATCCATACTATATTATGGTTGGTAACTGGGGTGGAGGTGCTGATAAGTTTTTTCAAAATGCTAGTGCATTAAGTGGTAATCAACTGAATGGTGTTGGTGATAACACTCCTACGGGAAACTGGGCAAACAATGGTACTTATGGATATTATAGAAATACTGGTGGAAGTGACTTTAAGTACGCTACAATGGATGCTAGGGGTATACAATATCGTTATGTGAAGATGAAATTTAATCTTTATAACTATCATTCAAATGATGGTGTGACTAGTAGAAACTTTTTAGGTATTAGTTCTGCTGTTGGCGATGGCGTGACCATTATGAGAGATAATAGTTCTGAGGGGGATTCTCAACATATTTTTACATATTATAGTGCTATCTCTAATAATGATAGCAATGGTTGTCCTTCTGCAACTCCAACATTTCCCTCACATGTACGGGTAGGAACTAATCCTGGTGCATTTATGGGTACTAGGTTCTGCTGTTTTTCTAGGGAAGGTAGCAGTTATACTACAGAATATGTTAGAAACTTTACTCCATACGCTGGAGATAGTAGTGGTGGCACTGCACCTAACGCCTTTACTGGTGATGCTTGGTATGAAATGGACTTAGGTATAAACAATCCTCATAATTTACATTGTGTCATTCATTCCGATCAAGATAGTAGTAATGAGGACACCTATATAAAACGAGGAGTTGTGCTCGTTCGTCCTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6c9099025960043e1947b9b90c2f14f6f6f1e996681ea9f106bfc89b358c0739
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5548
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn33 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank