Protein

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Genbank accession
YAF80390.1 [GenBank]
Protein name
major tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,58
Protein sequence
MHLPNGSQIFVESNRGSEIQATAVSNAKDPVFTVASGGTAYKKGDYVIITASSWGKLIDRVMRVKTNGEETSVTLEGVDTTDQNVFPSGGTASFAKIDAWTEIPCVQDLSQDGGEQQYYTYQCLADDQEQQLPTFKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYIPKAKEMRMWAGVLSFNEIPQTSVNEMETVSLSVSLKGRFTFLPANQD
Physico‐chemical
properties
protein length:220 AA
molecular weight: 24290,89260 Da
isoelectric point:4,77217
aromaticity:0,09545
hydropathy:-0,37318

Domains

Domains [InterPro]
DC_0037
ATT
1–51
DC_0037 IPR014918
YAF80390.1
1 220
Architecture
ATT
TAS
ATT 1-51 | TAS 52-215 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAF80390.1
1 220
Domain Start End Length (AA) Confidence
N-terminal 1 26 26 0,5514
Central domain 27 209 184 0,0953
C-terminal 210 220 10 0,6298
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-26
Central
27-209
C-terminal
210-220

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CBDS-04
[NCBI] 		3459908 Viruses >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAF80390.1 [NCBI]
Genbank nucleotide accession
PX104384 [NCBI]
CDS location
range 9230 -> 9892
strand +
CDS
ATGCATTTACCAAATGGATCGCAAATTTTCGTTGAGAGCAATCGCGGCAGCGAAATCCAAGCAACGGCAGTGTCAAACGCTAAAGATCCTGTATTCACAGTTGCATCTGGTGGAACTGCGTACAAGAAAGGTGATTATGTGATCATCACTGCGTCTTCTTGGGGTAAGCTGATTGATCGTGTTATGCGTGTAAAGACTAACGGTGAAGAAACAAGCGTAACTCTTGAAGGTGTAGATACTACTGATCAGAACGTTTTCCCGTCTGGCGGTACTGCATCTTTTGCCAAAATTGATGCATGGACTGAGATCCCTTGCGTTCAGGATTTGTCGCAGGACGGCGGCGAACAGCAATACTACACTTATCAGTGTTTGGCAGACGATCAGGAACAGCAGTTACCTACGTTTAAAAGCGCGGTATCACTGACCTATACCTTTGCTCACGAATACGATAACCCAATCTATCCGTTATTGCGTAAGGCTGACGAATCAGGTGATGTTAAGGCGCTTCGCATGTATATTCCGAAAGCTAAAGAAATGCGTATGTGGGCTGGTGTTCTTTCTTTTAACGAGATCCCTCAGACGTCCGTTAACGAAATGGAGACCGTTTCCTTGTCGGTATCCCTGAAAGGTCGCTTTACTTTCCTTCCTGCTAATCAGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6e60483267a8766b7d61a33895c46a75d73d9c0618c19ccde44f75b0db55970c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7815
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A machine learning approach to predict strain-specific phage-host interactions Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H. — — GenBank