Protein

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Genbank accession
XMR01838.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,84
Protein sequence
MSISFNNPLDTMTSTGGNGSLELIVLGGTPTNPRPIRFNSSSVIIPVQTLPAGEAGALVFDRTEAVLKYHNGTSWIAVYDTDTILEPIRLSLDEVNRKLNLKVETVSYSSGSVPTASISGTNLNIVFPLPSSSGGSGPTGLYTSMKPGAITQYSLTSGQSVSSIREQMSGVSGGQNGRNGSQSSPWKTSDGWCFADGMWWTWAGDSGTVTKQVPNLNQNAYLKGITTSGVTKTDSVIGGGATIGSTALSVAQIPALQFSFSGTTGGGGRHSHSQALKGMDRSGLNALTSSNDNGIPTVISNINEAPDHVHSFSGVTNWQGGGQGHSHGISNVDTNHFNVAYLYNIAESNVALSETVANSRYVLKTGDTMSGALSIANSATIRSDDTSLVLYFRNKAGTTERAAIYHSSSNNTLRLRSNGGTEVSINSSGLLTTPSLIVSNNSATVGGKNIVRSINGTAADGNGNVTISTTNTSASLAQNGWYKDENTGMITQWGYISLGDDTYITVNLPIPFPNACLNLQVTGRVSQAPGNRTAFSGHGNILSRTQIAVGASNPGSDQDHHGLGVYWSATGY
Physico‐chemical
properties
protein length:572 AA
molecular weight: 59622,00150 Da
isoelectric point:6,45335
aromaticity:0,06643
hydropathy:-0,23969

Domains

Domains [InterPro]
DC_0522
ATT
2–210
DC_0522 G3DSA:2.60.40.3940
IPR054075
RBD
486–572
IPR054075
XMR01838.1
1 572
Architecture
ATT
RBD
ATT 2-210 | RBD 473-572
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR01838.1
1 572
Domain Start End Length (AA) Confidence
N-terminal 1 131 131 0,9775
Central domain 132 330 200 0,0127
C-terminal 331 572 241 0,9699
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-131
Central
132-330
C-terminal
331-572

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey5
[NCBI] 		3375711 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR01838.1 [NCBI]
Genbank nucleotide accession
PQ471516.1 [NCBI]
CDS location
range 204924 -> 206642
strand +
CDS
ATGAGCATAAGTTTTAATAACCCATTAGATACTATGACCAGTACTGGTGGTAACGGGTCATTGGAACTAATAGTGCTTGGTGGTACACCAACTAACCCAAGACCTATCCGTTTCAATTCATCATCAGTCATCATTCCAGTACAGACTTTACCAGCGGGTGAAGCGGGTGCATTAGTATTTGACCGAACTGAAGCAGTACTGAAATATCATAACGGTACTAGCTGGATTGCAGTATATGACACTGATACAATTCTTGAACCAATTCGTTTATCTTTAGATGAAGTAAACAGAAAATTAAATTTAAAAGTAGAAACTGTTTCTTATAGTAGTGGTTCTGTACCAACTGCAAGTATCAGTGGTACGAACCTGAATATCGTATTCCCACTTCCTTCATCTTCTGGTGGTTCTGGTCCAACTGGTCTATACACTTCAATGAAGCCTGGAGCAATTACACAATATTCCTTGACTTCTGGACAATCTGTTAGTAGTATACGTGAACAGATGTCAGGTGTTAGTGGAGGACAAAATGGTAGAAACGGTTCACAGAGTTCACCTTGGAAAACTTCTGATGGTTGGTGTTTTGCTGACGGAATGTGGTGGACATGGGCTGGTGATAGTGGTACAGTAACTAAACAAGTACCGAACCTTAACCAGAACGCTTACTTGAAGGGCATTACTACAAGTGGTGTAACCAAAACCGACTCCGTTATTGGTGGTGGTGCAACAATTGGTAGTACTGCATTATCAGTAGCACAGATACCAGCATTACAATTTAGTTTCAGTGGAACAACTGGTGGTGGTGGTCGTCACAGCCATAGTCAAGCACTAAAAGGTATGGATAGAAGTGGTCTAAACGCCTTGACATCCAGTAACGATAATGGTATACCTACAGTCATTAGTAACATTAACGAAGCTCCTGACCACGTTCACAGCTTCAGTGGCGTAACAAACTGGCAAGGTGGTGGTCAAGGTCACTCACATGGAATTTCCAACGTTGACACAAACCACTTTAATGTGGCATACTTATACAACATTGCAGAATCCAACGTTGCATTAAGTGAAACAGTAGCTAACTCTCGTTATGTACTGAAAACTGGTGATACAATGTCTGGTGCGTTGTCTATTGCGAACAGTGCAACTATTCGTTCTGATGACACCTCATTAGTACTGTACTTCCGTAACAAAGCCGGAACAACAGAGCGTGCTGCAATTTATCATAGTTCATCTAACAACACATTACGACTAAGAAGTAACGGCGGTACTGAAGTTTCCATCAATAGTAGTGGTTTATTAACAACGCCGTCATTGATAGTATCAAACAACAGTGCAACGGTGGGTGGTAAAAACATAGTCCGTAGTATTAATGGTACAGCGGCTGATGGAAACGGAAACGTTACTATTTCTACAACAAATACATCTGCGTCTCTTGCACAAAATGGATGGTATAAAGATGAAAATACTGGTATGATTACCCAGTGGGGATACATAAGTTTAGGTGATGATACTTATATAACCGTAAACTTACCAATACCATTCCCTAATGCATGTTTGAACTTACAAGTTACTGGTAGAGTTTCACAAGCTCCAGGAAACCGAACTGCATTTTCTGGACATGGAAATATTTTAAGTAGAACCCAAATTGCAGTAGGTGCTTCTAACCCTGGAAGTGATCAAGACCACCACGGTTTGGGTGTGTACTGGTCTGCGACTGGTTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b2630d271e0591b3a591a2a819df0c7ea5bfe32cede4d6e2ddc83935a44e63ad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6307
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank