Protein

View in Explore
Genbank accession
YP_009820946.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAITQNTYTGDGSTVLFSFTFPYIEESDIKISLDGTSTTAYTFANATTVEFNTAPANGVDIRIYRDTNTDTINATFFPGSAIKAEDLNSNYTQNNYAAQETKRESDTAVSLANSALSIVNSVVSYDPVVNVAAIPAAPSDGDRIEVFDSTGIESFTPLTGVPGGFIGASTLTVRLIYSVTTWAWQDYNPTDPDSRYLKVNGSSTMAGDLVMGTNKITGLVDPTSAQEAATKNYVDTQDDTKLSLSGGTMTGNLVMGTNKITGLLDPTFSQDAATKNYVDNFDVVTDTTPQLGGDLDAQNNKITNLAEPTNVQDAATVNYVDTQDDTKVNLSGDTMTGDLNLPNLVATGDVQLSSQNGGPIAGTRNRIINGDMRIDQRNNGGSVTPATATYTLDRWQATQTTANKFAVQRNAGALTPPPGFTHYLGVTSLSAYSVLASDYYQIKQSIEGFNVADLDWNTAAAKTVTLSFWVRSNTTGNFGVVTSWGSAGANQRAYPVLYTISSANTWEYKTITIPGDSGPVGGGFEVGSEIGIQIRFSLGGGATNAGTPGSWATANSQTVVGDKSVVGINGGTFYITGVQLEVGTVATPFEHKSYGQELALCQRYYQKVDGEYRFDGIYGGGGPTTYSGMWFFPTFMRGLPTLSTVVESGIKATNIGWVAKSTTAALGVWEWQDTAVITTRWKAAVVAAHAEI
Physico‐chemical
properties
protein length:692 AA
molecular weight: 73496,19600 Da
isoelectric point:4,46006
aromaticity:0,09538
hydropathy:-0,20332

Domains

Domains [InterPro]
DC_0568
STR
3–692
DC_0568
IPR005604
ATT
5–113
IPR005604
YP_009820946.1
1 692
Architecture
ATT
STR
ATT 3-113 | STR 114-692
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B28
[NCBI] 		2545435 Uroviricota > Caudoviricetes > Autographivirales > Qadamvirus > Qadamvirus SB28
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009820946.1 [NCBI]
Genbank nucleotide accession
NC_048171.1 [NCBI]
CDS location
range 7823 -> 9901
strand -
CDS
ATGGCAATTACACAAAACACATACACTGGGGACGGGTCAACCGTCCTCTTTTCTTTTACATTTCCATATATCGAAGAGTCCGACATCAAGATTAGTCTTGACGGCACTTCTACAACTGCATATACATTTGCCAACGCTACAACTGTTGAATTTAATACCGCCCCAGCTAACGGTGTAGATATTCGTATTTATCGTGATACGAATACTGATACAATTAATGCTACATTCTTCCCTGGGTCTGCTATTAAAGCAGAGGACCTTAATAGTAACTACACACAGAATAATTACGCTGCTCAAGAAACAAAACGTGAATCTGATACTGCTGTTAGTTTAGCTAACAGTGCTCTAAGCATTGTTAATAGTGTTGTTTCTTATGATCCTGTAGTTAATGTAGCTGCAATCCCTGCAGCACCATCAGATGGTGATCGTATTGAAGTGTTTGATTCAACTGGTATTGAGTCCTTCACACCACTAACTGGAGTTCCTGGTGGATTTATTGGTGCTAGTACATTAACTGTCCGCCTTATCTACTCTGTAACAACCTGGGCATGGCAGGATTATAACCCTACAGATCCTGATTCACGTTACCTTAAGGTTAATGGTAGTAGTACCATGGCAGGAGATCTTGTTATGGGAACAAATAAAATTACTGGTCTTGTAGATCCAACATCTGCACAAGAAGCAGCAACTAAGAACTACGTTGATACTCAAGATGATACTAAGCTGAGTCTTAGTGGTGGTACCATGACAGGAAATCTTGTTATGGGGACAAATAAAATCACTGGTCTTTTAGATCCAACTTTTTCTCAAGACGCTGCAACTAAGAACTACGTTGATAATTTTGATGTTGTAACTGATACTACACCCCAACTTGGTGGTGATCTTGATGCTCAAAATAATAAGATCACTAACTTGGCTGAACCGACAAATGTACAAGATGCTGCTACTGTGAACTACGTAGACACACAAGATGATACTAAGGTAAATCTTAGTGGTGACACAATGACGGGAGACTTAAACCTTCCGAACCTTGTTGCTACTGGTGATGTTCAACTCAGCAGCCAAAACGGCGGGCCGATTGCTGGCACCCGTAACCGCATCATCAACGGTGATATGCGGATTGATCAGAGGAATAATGGGGGGAGTGTTACGCCGGCAACTGCTACATACACGCTGGACAGGTGGCAGGCTACTCAAACAACCGCCAACAAGTTTGCAGTTCAAAGAAACGCAGGAGCATTAACGCCCCCGCCAGGGTTTACACACTACTTAGGTGTAACCTCTCTTTCTGCCTACTCTGTTCTTGCCTCCGACTACTATCAAATAAAACAGAGTATTGAAGGGTTTAATGTTGCAGATCTTGATTGGAATACTGCAGCAGCAAAAACCGTAACATTGTCTTTTTGGGTTCGCTCCAATACGACAGGCAATTTTGGCGTAGTTACATCCTGGGGAAGCGCTGGCGCAAATCAACGTGCTTATCCAGTTTTGTATACGATCTCATCTGCTAATACCTGGGAGTACAAAACAATTACAATCCCTGGTGACTCCGGACCAGTGGGTGGAGGTTTTGAAGTTGGTTCCGAGATTGGTATACAGATAAGATTTAGCTTGGGTGGTGGCGCAACAAATGCGGGCACGCCAGGATCCTGGGCTACTGCAAATTCTCAAACCGTGGTTGGAGATAAGTCAGTCGTCGGCATCAACGGAGGCACCTTCTACATCACGGGCGTACAACTGGAAGTCGGAACCGTCGCCACCCCGTTTGAACACAAGAGCTACGGGCAGGAGCTTGCGCTGTGTCAGAGATATTACCAGAAAGTAGACGGGGAGTACAGATTTGATGGTATTTATGGCGGCGGCGGTCCTACCACTTACTCGGGAATGTGGTTCTTTCCAACTTTTATGAGAGGTCTGCCTACGCTATCAACAGTAGTCGAGAGTGGCATTAAAGCTACAAATATAGGTTGGGTCGCTAAATCAACGACTGCAGCACTGGGTGTCTGGGAATGGCAAGATACGGCAGTTATCACTACAAGATGGAAAGCTGCAGTCGTTGCTGCTCATGCGGAGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2a88d2fab50a1f2d37f10b88095c43b8ddd1ac154b1ab8fb30e37a8fde5b30fa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7995
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genetic Analysis of a Novel Cyanophage S-LB68 from the Huang Bohai Liu,X. 2020-10 — GenBank