Protein

View in Explore
Genbank accession
YP_006961.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/Swiss
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAITKIILQQMVTMDQNSITASKYPKYTVVLSNSISSITAADVTSAIESSKASGPAAKQSEINAKQSELNAKDSENEAEISATSSQQSATQSASSATASANSAKAAKTSETNANNSKNAAKTSETNAASSASSASSFATAAENSARAAKTSETNAGNSAQAADASKTAAANSATAAKTSETNAKKSETAAKTSETNAKTSENKAKEYLDMASELVSPVTQYDWPVGTNNNSVYVKIAKLTDPGAVSCHLTLMITNGGNYGSSYGNIDFVEISARGLNDARGVTSENITKFLSVRRLGSPNLAWDNQLRYGLVEGDGYFEVWCYQRAFIKETRVAVLAQTGRTELYIPEGFVSQDTQPSGFIESLAARIYDQVNKPTKADLGLENAMLVGAFGLGGNGLSYSSVQSNVDLINKLKANGGQYWRAARESGANVDINDHGSGFYSHCGDTHAAINVQYNTGIVKVLATTDRNLASDIVYANTLYGTANKPSKSDVGLGNVTNDAQVKKAGDVMSGDLDIRKETPSIRLKSTQGNAHLWFMNNDGGERGVIWSPPNNGSLGEIHIRAKTSDGTSTGDFIVRHDGRIEAKDAKISYKISSRTAEFSNDDTNTAATNLRVSGKQHTPIMLVRDSDSNVSVGFKLNNMNAKLLGIDIDGDLAFGENPDHKQNSKIVTRKMMDAGFSVAGLMDFTNGFAGPWEAKNISDQELDLNSLMIKKSDPGSIRVYQCVSAGGGNNITNKPSGIGGNFILYVESIRKVGDTDFTNRQRLFGTDLNREFTRYCSNGTWSAWRESVVSGMNQDVSVKSMSVSGRLSGNELSVGGAGVLNGNLGVGGGATSKMPSSDKGIVIGRGSIVREGGEGRLILSSSGGTDRLLQLRPAGATSLDNQVEISCTSASAGDTKISFGQGAAIRCNNAGSPIISAKAGQMIYFRPNGDGISEGQMILSPNGDLVVKGGVNSKEIDVTASQSLPLKETTATTGIGVNFIGDSATECSFGIENTAGGSAVFHNYTRGASNSVTKNNQLLGGYGSRPWLGSTYTEHSNAALHFLGAGDTSATNHGGWIRLLVTPKGKTISDRVPAFRLSDNGDLWLVPDGAMHSDLGLVRSIETLNAAVPRFNAPSIQDGRGLKIVAPQAPEIDLIAPRGSGASAPAIRAMWCDGSLADTTRYIGATQPGSTFYIGASGHDGEKFDSMRGSVAIKSAGGWGPTSTPTQVVLETCESGSISRLPRWGVDHNGTLMPMADNRYNLGWGSGRVKQVYAVNGTINTSDARLKNDVRAMSDPETEAAKAIAKEIGFWTWKEQADMNDIREHCGLTVQRAIEIMESFGLDPFKYGFICYDKWDEHTVVSEYGPANEDGTENPIYKTIPAGDHYSFRLEELNLFIAKGFEARLSAIEDKLGM
Physico‐chemical
properties
protein length:1396 AA
molecular weight: 147960,59410 Da
isoelectric point:5,93771
aromaticity:0,06590
hydropathy:-0,37600

Domains

Domains [InterPro]
DC_0608
ATT
2–170
DC_0608 DC_1159 DC_0783
Coil
Unmapped
57–77
Coil DC_1159 cd19958 IPR036388
IPR030392
CHP
1264–1323
IPR030392
IPR030392
CHP
1264–1394
IPR030392
cd10144
CHP
1264–1386
cd10144
YP_006961.1
1 1396
Architecture
ATT
STR
STR
RBD
ATT 2-170 | STR 171-883 | STR 936-1349 | RBD 1350-1395 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006961.1
1 1396
Domain Start End Length (AA) Confidence
N-terminal 1 114 114 0,9161
Central domain 115 313 200 0,6150
C-terminal 314 1396 1082 0,7154
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-114
Central
115-313
C-terminal
314-1396

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage T5
[NCBI] 		2695836 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus T5
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006961.1 [NCBI]
Genbank nucleotide accession
NC_005859.1 [NCBI]
CDS location
range 81865 -> 86055
strand -
CDS
ATGGCTATAACTAAAATAATTCTACAGCAAATGGTCACTATGGACCAGAATAGTATAACTGCAAGTAAATATCCTAAGTATACAGTTGTGCTTTCTAATTCCATTAGCTCTATTACTGCTGCAGACGTAACCTCTGCGATAGAGTCTTCTAAAGCATCCGGCCCTGCAGCTAAGCAGTCTGAAATTAATGCTAAGCAATCAGAGTTAAATGCCAAAGATTCTGAGAATGAGGCAGAAATTTCCGCAACATCTTCTCAGCAATCTGCAACTCAGTCTGCCTCCTCTGCTACTGCTTCTGCTAATAGTGCTAAAGCTGCAAAAACTTCCGAGACTAACGCCAATAATAGTAAAAATGCTGCAAAAACTTCAGAAACGAACGCAGCATCAAGTGCTAGTAGCGCATCTTCCTTTGCAACGGCGGCAGAAAATTCCGCGAGGGCCGCAAAAACATCTGAAACAAATGCTGGTAATAGCGCTCAGGCGGCGGATGCATCAAAAACAGCGGCTGCAAACTCTGCCACAGCAGCAAAAACATCAGAAACCAATGCAAAGAAAAGCGAGACAGCAGCAAAAACAAGCGAAACCAATGCCAAAACGTCAGAGAATAAGGCGAAAGAATATCTCGATATGGCAAGTGAACTCGTAAGCCCAGTAACGCAATACGACTGGCCCGTCGGTACAAACAACAATAGCGTTTACGTCAAGATAGCTAAACTTACCGATCCAGGTGCAGTAAGCTGTCACCTAACGCTAATGATTACAAATGGCGGTAACTACGGTTCAAGTTACGGTAATATTGACTTTGTAGAGATATCTGCTCGCGGTCTTAACGATGCAAGAGGGGTAACCAGTGAAAATATAACTAAATTTTTAAGTGTTCGCCGACTCGGTTCACCAAACCTTGCCTGGGATAACCAACTGCGTTACGGCCTTGTAGAAGGTGATGGCTATTTCGAAGTCTGGTGCTATCAGCGAGCCTTTATTAAAGAAACAAGGGTTGCAGTACTGGCACAGACTGGCAGGACTGAATTATACATTCCAGAAGGATTTGTTAGTCAAGATACTCAACCATCAGGATTTATTGAAAGCCTAGCCGCAAGGATTTACGACCAGGTAAATAAGCCTACTAAGGCAGACTTGGGCCTTGAAAATGCTATGCTTGTAGGCGCTTTCGGTCTTGGCGGTAACGGTCTTTCCTATAGCTCCGTGCAGAGCAACGTAGACTTGATCAACAAGCTTAAAGCTAATGGCGGTCAATACTGGCGAGCGGCTCGCGAATCAGGTGCAAACGTTGATATTAACGATCACGGTTCTGGCTTTTACTCTCATTGCGGAGATACCCATGCTGCAATTAACGTGCAGTACAACACTGGAATCGTTAAGGTGCTAGCAACCACTGACCGCAACCTTGCAAGTGACATTGTTTACGCCAACACTCTCTACGGCACGGCAAACAAACCGTCGAAATCGGACGTTGGACTTGGCAACGTAACTAACGATGCGCAGGTGAAAAAAGCAGGCGATGTTATGTCAGGTGATCTTGATATACGGAAAGAAACGCCGTCTATCAGGTTAAAATCAACACAAGGAAACGCCCATCTGTGGTTCATGAACAACGACGGAGGCGAGCGCGGTGTTATTTGGTCACCACCAAACAATGGCTCACTTGGCGAAATCCACATCAGGGCTAAGACTTCCGACGGCACCAGTACTGGAGATTTTATCGTGCGTCACGATGGGCGAATCGAAGCGAAAGATGCAAAGATCAGTTATAAGATCTCATCTCGGACTGCTGAATTTTCCAACGATGACACAAACACAGCTGCTACAAACCTGCGAGTCAGTGGTAAGCAACATACGCCCATCATGTTAGTGCGCGACTCAGATTCTAATGTGTCGGTTGGATTCAAGCTCAATAACATGAACGCAAAGCTTCTAGGTATTGATATTGATGGAGATCTAGCTTTTGGTGAGAATCCTGATCATAAACAAAACAGCAAGATTGTAACGCGCAAGATGATGGATGCTGGTTTCTCTGTTGCTGGGCTAATGGATTTTACTAATGGATTCGCCGGACCTTGGGAGGCTAAAAACATTAGTGACCAGGAACTTGATCTTAACTCCTTGATGATTAAGAAAAGCGATCCCGGGTCGATTCGTGTTTACCAGTGCGTTAGTGCTGGTGGCGGCAACAACATTACCAACAAGCCAAGCGGAATAGGTGGTAACTTCATTCTTTACGTCGAGTCAATCCGCAAAGTGGGTGACACTGATTTCACTAACCGCCAGCGACTTTTTGGCACTGACTTAAATCGTGAGTTTACACGTTATTGTAGCAATGGCACGTGGTCAGCCTGGCGTGAGTCTGTTGTCAGCGGCATGAACCAAGATGTGAGTGTTAAGTCAATGAGCGTATCAGGTCGCCTGTCTGGTAATGAGCTTTCGGTTGGTGGCGCTGGCGTTCTGAACGGAAACCTCGGTGTTGGTGGCGGCGCTACATCAAAAATGCCATCGTCTGATAAGGGGATCGTAATTGGTCGCGGCTCTATAGTTCGTGAAGGTGGTGAAGGTAGATTGATTTTATCTTCCTCTGGCGGAACTGATAGACTATTGCAGCTTCGTCCAGCGGGGGCAACGTCGCTAGATAACCAGGTTGAAATTTCTTGCACATCGGCCAGCGCTGGAGACACAAAAATCTCATTTGGTCAAGGTGCGGCAATTCGTTGCAACAATGCAGGCTCTCCAATCATTAGCGCAAAAGCTGGTCAAATGATATATTTTCGACCAAATGGTGATGGGATATCGGAAGGTCAGATGATTCTTTCACCAAATGGTGATTTGGTTGTTAAGGGTGGTGTCAATAGCAAAGAGATTGATGTTACCGCGTCACAGAGCTTACCACTGAAGGAGACAACCGCGACAACCGGGATTGGCGTTAACTTTATCGGCGATAGCGCAACGGAGTGTTCTTTTGGTATTGAGAATACGGCTGGAGGTTCTGCCGTGTTCCATAACTACACTCGCGGAGCGTCCAATAGCGTAACGAAGAACAACCAGCTTTTAGGTGGTTATGGTTCACGCCCGTGGTTAGGTTCTACATATACTGAACATAGCAATGCAGCATTGCATTTCCTGGGGGCTGGCGATACATCGGCAACCAATCACGGGGGGTGGATTCGTTTACTTGTCACTCCTAAAGGTAAGACGATTAGCGATAGGGTTCCGGCATTCAGACTGTCAGATAATGGAGATCTTTGGCTAGTTCCAGATGGAGCTATGCACTCAGATCTTGGGTTGGTGCGTAGCATTGAAACACTAAATGCTGCTGTGCCTAGGTTTAACGCCCCGAGTATACAGGATGGACGAGGGCTGAAAATTGTTGCACCCCAGGCACCAGAGATTGACTTGATTGCGCCACGTGGTTCTGGGGCCTCGGCGCCAGCTATTCGAGCTATGTGGTGTGATGGTAGTCTAGCAGATACGACGCGATATATTGGCGCTACACAACCCGGTTCGACTTTCTATATTGGTGCGTCTGGTCATGATGGAGAGAAGTTCGACTCAATGCGTGGTAGTGTAGCAATTAAGTCCGCTGGGGGGTGGGGTCCAACTTCAACGCCAACACAGGTTGTGTTGGAGACATGTGAGTCTGGAAGCATCTCTCGTCTCCCACGGTGGGGGGTTGACCATAACGGAACGTTAATGCCGATGGCAGATAACAGATATAACTTAGGCTGGGGATCTGGTAGGGTTAAGCAGGTTTACGCCGTAAATGGTACAATTAACACCTCCGATGCTAGATTGAAGAACGATGTTCGAGCCATGAGCGATCCTGAAACCGAAGCGGCCAAAGCTATTGCGAAGGAGATTGGGTTTTGGACGTGGAAGGAGCAAGCTGACATGAATGATATTCGCGAACACTGCGGTTTGACCGTGCAGCGTGCAATTGAGATCATGGAAAGTTTTGGGCTTGATCCGTTCAAATATGGTTTCATCTGCTATGACAAATGGGATGAACATACGGTTGTTTCTGAATACGGCCCTGCAAATGAAGATGGAACTGAAAACCCGATCTACAAAACAATCCCGGCTGGCGATCATTACTCATTCCGCCTTGAAGAGTTAAACCTTTTTATCGCAAAAGGATTTGAAGCGAGGTTATCTGCAATTGAGGATAAATTAGGTATGTAA

Genome Context

Genome Context

Tertiary structure

1 / 4
PDB ID
Source
Method
Resolution
Oligomeric State

Literature

Title Authors Date PMID Source
Structure of two promoters and a terminator of transcription from the region of bacteriophage T5 early genes D10-D15 Kaliman,A.V., Krutilina,A.I. and Kryukov,V.M. 1987 — GenBank
The nucleotide sequence of bacteriophage T5 RNAI Kryukov,V.M., Shlyapnikov,M.G., Kazantsev,S.I., Kaliman,A.V., Ksenzenko,V.N. and Bayev,A.A. 1982 — GenBank
Bacteriophage T5 complete genome Ksenzenko,V.N., Kaliman,A.V., Krutilina,A.I. and Shlyapnikov,M.G. 1982-05 — GenBank