Protein

View in Explore
Genbank accession
QHB42727.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MALTNLTKPRARWATFKLKAANAISRSLYEKLCEQPVSIKSFGAKVDGTTDDTDAIRATIDFAHAMMNGNGKVFLTAGDIKYTSFYVPATVELVGAGRKTRLYPTNESGTYGLSVAANAVARDFFIYGDNSQGWGLQVSNNCQLKNVHIYNFKGDTTADDGIGLLLEGSWSSTFERVIVKQNRVDCVLGKDGTSLENNANTFYSCGFEYSVDEGFLIRKAAQTTLVGCWFGHHGIDNNDQGQAAFRCIDEKATVSLIGFYSEWTSIAVDMQGRTLELSNFRSSGNILIGKGKSFIQGGELFGYGGKIIPSAGSTGYALVVNCTHDLGYDIAPEAEDPEGRISLLNMGGHAMSMRQGLNIYGGKNLELNGGSGIEVNNGAPLRTNGTGGIGSNGGKIWVGGEDLEVVDSSRGLILKAPNTQRYRLQVDSSGNVTTTLVT
Physico‐chemical
properties
protein length:438 AA
molecular weight: 46973,12920 Da
isoelectric point:5,93737
aromaticity:0,08904
hydropathy:-0,21324

Domains

Domains [InterPro]
IPR012334
STR
8–296
IPR012334
IPR011050
STR
37–414
IPR011050
QHB42727.1
1 438
Architecture
STR
STR 8-414 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QHB42727.1
1 438
Domain Start End Length (AA) Confidence
N-terminal 1 53 53 0,9670
Central domain 54 326 274 0,9872
C-terminal 327 438 111 0,6472
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-53
Central
54-326
C-terminal
327-438

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP-HS15
[NCBI] 		2686284 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Kaohsiungvirus
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QHB42727.1 [NCBI]
Genbank nucleotide accession
MN807240 [NCBI]
CDS location
range 28968 -> 30284
strand -
CDS
TTGGCACTAACTAATTTAACTAAGCCACGTGCTCGGTGGGCTACCTTCAAGCTAAAGGCTGCTAATGCAATATCTCGTAGTTTGTATGAGAAACTGTGTGAGCAGCCTGTCTCTATCAAGAGCTTTGGTGCGAAGGTAGATGGTACAACGGATGACACTGATGCAATCAGAGCAACTATTGATTTCGCACATGCAATGATGAATGGTAACGGTAAGGTATTCCTTACTGCTGGTGACATCAAATACACTAGCTTCTATGTCCCTGCTACAGTAGAACTTGTTGGTGCTGGTCGTAAGACAAGACTCTACCCAACCAATGAAAGCGGTACTTATGGACTATCTGTAGCAGCTAATGCGGTAGCCAGAGACTTCTTCATATATGGAGACAACTCTCAAGGATGGGGTCTCCAAGTATCTAACAATTGCCAACTTAAGAACGTACACATTTATAACTTCAAAGGTGACACCACTGCTGACGATGGCATTGGTTTATTGCTAGAAGGTAGTTGGTCTTCTACGTTTGAACGTGTAATTGTTAAGCAGAACAGAGTCGACTGTGTACTTGGCAAGGACGGTACTTCTCTAGAAAACAATGCAAACACTTTCTATAGCTGTGGGTTTGAGTATTCAGTAGATGAAGGTTTCCTTATCCGTAAGGCTGCGCAAACTACTCTTGTTGGTTGCTGGTTTGGACACCACGGTATTGATAACAATGACCAAGGTCAAGCTGCATTCCGATGTATAGATGAAAAAGCCACAGTTTCGTTGATTGGCTTCTACTCTGAGTGGACAAGTATTGCTGTGGATATGCAAGGTCGTACACTAGAGCTAAGTAACTTCCGTTCATCTGGTAATATCTTAATTGGTAAAGGTAAGTCCTTCATTCAAGGTGGTGAACTCTTCGGTTACGGTGGTAAGATTATTCCGAGTGCTGGTAGTACTGGCTACGCTCTTGTTGTTAACTGTACGCATGACTTAGGCTATGATATTGCACCAGAAGCAGAAGACCCAGAAGGTCGTATCAGCTTACTTAACATGGGCGGTCACGCTATGTCTATGCGTCAGGGTCTTAATATCTATGGTGGCAAGAATCTAGAGCTCAATGGCGGCAGTGGTATTGAAGTTAACAATGGTGCTCCATTAAGAACTAACGGTACTGGTGGTATTGGTAGTAACGGTGGTAAGATTTGGGTAGGAGGTGAAGACCTTGAGGTTGTTGATTCTTCCCGTGGTCTTATACTTAAAGCACCTAACACTCAGAGGTACCGACTACAGGTAGATAGCTCAGGTAACGTAACCACTACCTTAGTTACGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2bd027b27358d80e582b9ad03a38dc46a2386d85fd9b71288ca6171bff6697e9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7927
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage VP-HS15 from Vibrio parahaemolyticus Liu,X.-Q. 2025-01-27 — GenBank