Protein

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Genbank accession
XFA12816.1 [GenBank]
Protein name
tail nozzle
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MASNNYQPASSYIQPSFAGGELAPSLQGRVDLARYAISLKTCRNFVVQPYGGASNRPGFRFNTACKYKNYATRLIPFSFNTEQTYVIEIGHQYMRFHRDGAPVLDGGEPVEVATSWHRDDIFEIKYVQSADVLTLVHPDYKPRQLKRYSETDWVLDFFDNEFGPLQDQNVDESITIISNGVVDLVELTASEAIFSEAMVGTTIKLQQVSSGEVAAWQNRSAVEQGDLAYVDERTYKATSLSGGVDNTLTGDNTPAHTEGEQWDGPRTTIQGVTETLGVKWAYLHSGFGYVRITEHRDDTHIVGRVIGRLPEEIRTEGTYRWSFAAWDSDRGYPGTASYYQQRLVFANSRAEPQAFWMSETGIFNGFKVSFPIEADDAITFTLASRQVNEIRHLIPLGSLLALTSGAEWMISDNDQGLAPDTVSADVQGYRGASDVTPLLIGSSALYVQARGTVIRDLAYSFELDGYTGDDLTIFSNHLLKDYTIKDWAYAQEPDSVVWLVRSDGALLSMTYQREQQVVAWARHDTVDGEFESVAVIAEGSRDVPYAIVKRQVGGETVRYIEYLDSRRFSHVEDFFCVDSGLTYDGRSSTGALLTIGGGTNWTTDEDLTLTASASSFSPSDVGRRVRVYTGDKFADVDVDAYVSATSVAVSAVRIVPEELRGVQGDRWGFMAKTLTGLDHLEGKTVSILADGNVHAPEVVTGGQVTLDYSAAVVHVGLPIESDIETLPISSSGATVRDSHKAIVGVGIQLEKSRGVFAARSRRDFTSSDLIELKQRDAEDWGEATGLETGLVELGIPTSWDKDGSLFIRQSDPLPLTILSIIPRVVMGGKG
Physico‐chemical
properties
protein length:830 AA
molecular weight: 91235,37940 Da
isoelectric point:4,77484
aromaticity:0,09759
hydropathy:-0,24120

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XFA12816.1
1 830
Domain Start End Length (AA) Confidence
N-terminal 1 580 580 0,8206
Central domain 581 779 200 0,4053
C-terminal 780 830 50 0,0736
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-580
Central
581-779
C-terminal
780-830

Taxonomy

  Name Taxonomy ID Lineage
Phage Cobetia phage Carin1
[NCBI] 		3241087 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XFA12816.1 [NCBI]
Genbank nucleotide accession
PQ119497 [NCBI]
CDS location
range 28655 -> 31147
strand -
CDS
ATGGCATCGAACAACTACCAGCCGGCATCTAGCTACATCCAGCCGTCGTTCGCGGGCGGCGAGCTGGCACCAAGCCTGCAGGGGCGAGTCGACCTGGCACGCTACGCCATCAGCCTGAAGACGTGCCGTAACTTCGTGGTGCAGCCCTATGGCGGCGCCAGCAACCGGCCTGGCTTCCGGTTCAACACGGCCTGCAAGTACAAGAACTATGCGACTCGACTGATCCCGTTCTCGTTCAATACCGAACAGACCTACGTCATCGAGATCGGGCATCAATACATGCGTTTCCATCGTGACGGCGCGCCAGTGCTGGACGGGGGCGAGCCGGTGGAAGTGGCGACATCCTGGCATCGAGACGACATATTCGAGATCAAGTATGTCCAGTCGGCTGACGTGCTGACCCTGGTGCATCCTGACTACAAGCCGCGCCAGCTCAAGCGGTACTCTGAAACAGACTGGGTGCTCGACTTCTTCGACAACGAGTTCGGCCCGCTGCAGGATCAGAATGTTGATGAGTCGATAACCATTATCTCCAATGGCGTCGTTGATCTTGTGGAGCTGACCGCCAGCGAGGCGATATTCAGCGAGGCGATGGTGGGAACCACTATCAAGCTGCAGCAGGTTTCTTCCGGCGAGGTGGCAGCCTGGCAGAATAGGTCTGCCGTTGAGCAGGGTGATCTTGCTTATGTGGACGAGCGGACATACAAGGCCACGTCGCTATCGGGTGGAGTGGACAACACGCTGACCGGCGACAACACGCCAGCGCACACTGAAGGCGAGCAGTGGGACGGCCCGAGAACCACCATACAGGGCGTGACGGAAACGCTGGGCGTGAAGTGGGCATACCTGCACAGCGGGTTCGGCTATGTGCGAATCACTGAGCATCGTGACGACACGCACATCGTCGGGCGCGTCATTGGTCGCCTGCCGGAAGAGATCCGCACCGAAGGCACGTACCGCTGGAGCTTCGCGGCATGGGATTCCGATCGAGGGTACCCGGGTACGGCATCCTACTATCAGCAGCGCCTGGTGTTCGCCAACTCAAGGGCTGAGCCGCAAGCGTTCTGGATGAGTGAGACCGGCATCTTCAATGGGTTCAAGGTCAGCTTCCCGATCGAGGCCGACGACGCTATCACCTTCACCCTGGCCAGCCGTCAGGTGAATGAGATCCGCCATCTAATACCGCTGGGCTCGCTGCTTGCGCTCACGTCGGGCGCCGAGTGGATGATCAGCGATAACGACCAGGGGCTTGCGCCAGACACGGTGAGCGCTGACGTTCAAGGTTACCGTGGTGCATCTGATGTCACTCCGCTGCTCATCGGCAGCAGTGCACTCTACGTGCAGGCTCGCGGCACGGTGATACGCGACCTGGCATACAGCTTCGAGCTTGATGGCTATACCGGCGATGACCTGACCATATTCAGCAACCATCTGCTCAAGGATTACACGATCAAGGATTGGGCATACGCGCAGGAGCCTGACAGCGTGGTGTGGCTGGTTCGCTCCGATGGCGCACTGCTATCGATGACGTACCAGCGCGAGCAGCAGGTGGTCGCATGGGCCCGGCATGACACTGTTGACGGTGAGTTCGAGTCAGTGGCCGTCATTGCAGAAGGGAGCCGCGATGTCCCGTATGCCATCGTGAAGCGCCAGGTTGGCGGCGAGACGGTGCGCTATATCGAGTACCTGGACTCGCGCCGCTTCAGCCACGTTGAAGACTTCTTCTGTGTCGACTCCGGTCTGACGTATGACGGCAGATCATCTACTGGGGCGCTGCTGACTATCGGCGGCGGAACCAACTGGACGACCGATGAAGACCTGACCCTGACCGCCAGCGCATCATCATTCTCGCCGTCTGACGTTGGCCGTCGCGTGCGGGTCTATACTGGCGACAAGTTCGCTGATGTCGATGTTGACGCATACGTGAGCGCCACCAGCGTGGCAGTGAGCGCGGTACGCATTGTGCCGGAGGAGCTGCGGGGCGTGCAGGGCGACCGCTGGGGCTTCATGGCCAAGACACTGACAGGCCTTGATCACCTTGAGGGCAAGACGGTTTCCATCTTGGCTGATGGCAACGTGCACGCCCCGGAGGTAGTGACTGGCGGCCAGGTGACGCTCGACTACAGCGCGGCAGTGGTGCATGTGGGCCTGCCGATCGAGTCAGACATCGAGACTCTGCCGATCAGCAGCTCGGGCGCCACGGTGCGCGACTCTCACAAGGCCATCGTTGGCGTTGGCATCCAGCTTGAGAAGTCACGCGGTGTGTTCGCTGCACGCAGTCGGCGCGACTTCACTTCCAGCGACCTGATTGAGCTGAAGCAGCGCGATGCTGAAGACTGGGGCGAGGCGACAGGGCTGGAGACAGGGCTTGTTGAGCTGGGCATACCGACCAGCTGGGACAAGGATGGCAGCCTGTTTATCCGCCAGTCCGACCCGCTGCCGCTGACAATCCTTTCGATAATTCCAAGGGTGGTGATGGGTGGCAAAGGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
576efda83673ecb5019025e09fd35be465d8785cf43fd2719b44bd61316d322b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2865
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biochemical and structural characterization of a tail-spike protein with depolymerase activity identified in a marine podovirus Sirigu,S., Roret,T., Mocaer,P.-Y., Jouanneau,D., Legrand,P., Baudoux,A.-C. and Czjzek,M. 2003-11 — GenBank