Protein

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Genbank accession
AGH26593.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,82
Protein sequence
MSLTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSALRPFKSLQRAFLEVARFSYRVGLSNDEFDAFSIMLYPAEYVVDNRPGDVLYTNVAPIDANSNLDLTSPNNVLYKYNSVEGGIIVPRGCSVVGTDLRRTKIIPKYVPYPTTYPAQGINTEAQVPPRTAIFKVTGGTYFWQFSFFDGAEEGVYFKPDSVTTLAPKFSHHRLTCFEFADGLNPLSTLIANGTVPNADYSAVSNILARTDLEIYYQKVSKAFATIPDTSGDPSTDQIQARVEENRIVGPISDEYRVLQITRNGQTATAVTVDEFDDPRDHGFSVGVNINVSGVTGSTGSQSEADAGLYNGSFTVTSASGNVFTYQMQGEPTGNAVGSNIAVKTEIDTVDSASPYAFNLSLRSVWGMNGMHANGAKATGFKSMVVAQFTGLSLQKDDRAFVRYNASTGNYDVATAGDGAHLDGFAEYRKGWGHEHIKCSNDSFIQAVSVFAVGYQGHFTALSGGDMSITNSNSNFGNTALRSAGFKAKAFSKDKAGALTHIIPPKALNVISTTATGASGTNTITLANDGSVNGVIQGMTITGTNIGVGATVGNINVSTRVLTLTASNTGAVNGNVIFGEETSINWVNIDIQRTKTINASLAGQGGTPGTRLYLYGYTVEASPPTTRVQGFAVGARQDGTGASAIADKINCLLVAQGATDASVQSASISPYGPSVSGLAAGVVGSPLQYDANTYTISGVAGSVGGWYLSVSSVNNEIYTTLSTNTTYNTVNFTPTTFLKRIPDPRDLQDRTYRVRYVIDKDKTNPLPRDPLSGYVMQPLNSDTTSFNLQRCFYIYDIEVVQPFVRGTDDGIYYITLLCGSISPTTSNFDDRKFSQNVNEVYPTFDRDNPIADPAAATSVADNVTIGLVNATDGASPPVKDPKLSITKESTVFLLTDTGWTQPGTTPNYDSVNKRLSNVELTARAGDEEVRKINIRENNDGTVAPINVEFRRHSILRSGNHTFEYLGFGPGNYSTAFPQTQVETLTQEQIRFSQSIKEEGGVSFYSGLNSNGDLFIGNQVINPVTGQITNEDVAQLNVVGEESTTIETFSELVLTDKITVIGGASNQLESIFAGPVTFQGQSTFTNNISAKKLTYFNQDGTVIKQTLLAPENASGLPDFSNITGYDTPADGDIVYNINWTPGKSLGWIYYGGAFKEFGLTDTGDINISTTGNGHIGLGEAPDTTYRVRINGSVRIDGDVVGTGRGVVGSDKYITKSYTGDGNTLTFAVTTYGGGIKHSDDSLLVFLNGVAQIAGTNYTVDTNGANVVFSSGDAPLSTDTVHILELPI
Physico‐chemical
properties
protein length:1318 AA
molecular weight: 141001,52930 Da
isoelectric point:4,90324
aromaticity:0,09256
hydropathy:-0,21275

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH26593.1
1 1318
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,9553
Central domain 83 311 230 0,9678
C-terminal 312 1318 1006 0,1060
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-82
Central
83-311
C-terminal
312-1318

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-RSM3
[NCBI] 		536446 Uroviricota > Caudoviricetes > Pantevenvirales > Ronodorvirus > Ronodorvirus ssm4
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH26593.1 [NCBI]
Genbank nucleotide accession
HQ634176.1 [NCBI]
CDS location
range 58666 -> 62622
strand -
CDS
ATGTCACTAACGAGACTCAAGAATATTATTACGTCCAGAACTGGACGTATCATATATGTCAACCCAGACGATTTCGATGCATCTGATGCGATTGACAACAGGGGTAACTCTGCATTGCGTCCGTTTAAAAGTTTACAGAGAGCATTTTTAGAAGTAGCAAGATTTTCATATAGAGTTGGTTTAAGTAATGACGAGTTTGATGCTTTTAGTATCATGCTCTACCCTGCTGAGTATGTCGTAGACAATAGACCAGGCGATGTTTTATATACAAACGTTGCACCTATTGATGCAAACTCAAACCTAGACTTAACTTCTCCTAACAATGTTCTCTACAAATATAACTCAGTCGAAGGTGGTATTATTGTACCTAGAGGTTGTTCTGTTGTTGGTACAGACCTCAGAAGAACTAAAATAATTCCAAAATACGTTCCATATCCCACTACATATCCAGCTCAAGGTATTAATACGGAAGCTCAGGTTCCACCAAGAACAGCAATCTTCAAAGTCACTGGTGGTACATACTTCTGGCAGTTCTCGTTCTTCGATGGAGCAGAGGAGGGAGTATATTTCAAACCTGATTCAGTCACAACTTTAGCACCTAAGTTTTCTCACCATAGACTTACATGTTTTGAGTTTGCTGATGGTCTTAATCCTTTATCAACTCTTATTGCAAACGGTACAGTTCCTAACGCTGACTACTCTGCAGTATCAAATATTCTAGCAAGAACTGACTTAGAGATATATTATCAGAAAGTATCTAAAGCATTTGCTACAATACCTGATACATCTGGTGATCCTTCAACTGACCAAATACAGGCAAGGGTTGAGGAAAACAGAATCGTTGGTCCTATATCTGATGAATACAGAGTATTACAGATCACACGTAATGGTCAGACTGCAACAGCAGTCACAGTTGATGAATTTGATGATCCTAGAGATCATGGCTTCTCTGTTGGTGTAAACATCAACGTTAGTGGTGTCACTGGTTCGACTGGATCACAGTCTGAAGCAGACGCAGGTTTATATAATGGTTCATTTACTGTCACATCTGCATCTGGAAACGTATTCACCTATCAAATGCAGGGAGAACCAACTGGTAATGCTGTAGGTTCAAACATTGCAGTTAAAACTGAGATTGATACTGTTGACTCTGCATCACCATACGCATTTAACCTATCACTAAGAAGTGTATGGGGTATGAATGGTATGCATGCAAACGGTGCAAAGGCAACTGGTTTCAAATCAATGGTTGTGGCACAGTTTACTGGATTATCACTACAGAAAGATGACAGAGCATTTGTAAGATATAATGCATCAACTGGAAACTATGATGTAGCAACAGCAGGAGATGGTGCACACTTAGATGGTTTCGCTGAGTATAGAAAGGGATGGGGTCATGAACACATCAAGTGTAGTAATGATTCATTCATACAGGCAGTTTCTGTGTTCGCTGTGGGATATCAAGGTCACTTTACTGCATTAAGTGGTGGTGATATGTCAATCACCAACTCTAACTCTAACTTTGGTAATACTGCATTGAGATCAGCAGGATTCAAAGCAAAAGCATTCTCTAAAGATAAGGCAGGTGCATTAACACATATAATACCACCTAAAGCTTTAAATGTTATCTCTACAACTGCTACTGGTGCTAGTGGAACAAATACAATTACGTTAGCAAATGATGGTAGTGTAAATGGTGTCATACAAGGTATGACTATCACAGGAACTAATATTGGAGTAGGAGCGACAGTCGGAAATATAAACGTAAGCACAAGAGTATTGACACTTACAGCTTCAAATACTGGTGCTGTAAATGGAAACGTAATCTTTGGTGAAGAGACATCAATTAACTGGGTTAACATTGACATCCAGAGAACTAAAACTATCAACGCATCACTTGCAGGACAGGGTGGTACACCAGGTACAAGGTTATATCTATATGGTTATACTGTAGAAGCATCTCCACCAACAACAAGAGTACAGGGTTTTGCAGTAGGAGCAAGACAAGATGGTACAGGTGCAAGTGCAATAGCAGATAAAATAAACTGTTTACTTGTAGCACAGGGTGCAACTGATGCAAGTGTACAATCTGCAAGCATATCACCTTATGGTCCTAGTGTTTCTGGTTTGGCAGCAGGTGTTGTTGGATCTCCATTACAATATGATGCTAATACATATACAATTAGCGGTGTAGCAGGATCAGTCGGTGGATGGTATCTATCAGTCAGTTCAGTAAATAATGAAATCTATACAACTTTATCTACTAACACAACATATAACACAGTTAACTTCACACCAACTACATTCCTCAAGAGAATACCTGACCCAAGAGACTTACAAGATAGAACATATCGTGTAAGATATGTAATTGATAAAGATAAGACCAATCCATTACCAAGAGATCCCCTCTCTGGTTATGTTATGCAACCATTGAATAGTGATACTACATCATTTAATTTACAAAGATGTTTCTACATCTATGACATTGAGGTTGTACAACCATTTGTAAGAGGTACTGACGATGGTATCTACTACATAACTCTCTTATGTGGATCTATATCACCTACAACTTCTAACTTTGATGATAGGAAGTTCTCTCAAAATGTCAATGAAGTTTATCCTACATTTGACAGAGATAATCCAATCGCTGATCCTGCTGCTGCAACATCAGTTGCAGATAATGTCACCATTGGTCTTGTTAATGCAACAGATGGTGCATCGCCACCTGTTAAAGATCCAAAGTTATCTATTACAAAGGAATCAACAGTATTCTTACTAACAGATACAGGATGGACACAACCAGGTACTACACCTAACTATGACTCAGTTAATAAAAGATTATCTAACGTAGAGTTAACTGCACGAGCAGGAGACGAAGAAGTAAGAAAGATTAATATACGAGAAAATAATGATGGTACAGTAGCACCAATTAACGTAGAGTTTAGACGACACTCTATCCTAAGATCAGGAAACCATACGTTTGAATACCTTGGTTTTGGTCCAGGTAACTACAGTACAGCGTTCCCTCAGACACAGGTAGAAACTCTAACTCAAGAGCAAATTAGATTCTCACAGTCAATTAAAGAAGAGGGAGGAGTTTCATTCTACTCAGGATTGAACTCAAATGGTGATCTATTCATTGGTAATCAGGTTATCAACCCAGTCACAGGTCAGATCACTAACGAAGATGTTGCACAGTTAAACGTTGTTGGTGAAGAGAGCACAACCATTGAAACATTCTCTGAGTTGGTTCTAACGGACAAGATAACTGTTATTGGTGGAGCATCAAACCAGTTAGAATCTATCTTTGCAGGTCCTGTCACATTCCAAGGACAGAGTACATTTACTAATAATATATCTGCTAAGAAACTTACATACTTTAACCAAGATGGTACTGTTATTAAACAGACTTTACTAGCACCAGAAAATGCAAGTGGACTACCAGATTTCTCTAATATCACAGGATATGATACACCTGCTGATGGAGATATAGTTTACAATATCAACTGGACACCAGGTAAATCACTAGGTTGGATATACTATGGTGGTGCATTTAAAGAGTTTGGACTGACAGACACAGGAGATATTAACATATCTACCACAGGTAATGGACATATAGGTTTAGGAGAAGCACCTGATACAACTTACAGAGTCAGAATTAATGGTTCAGTTAGAATTGACGGAGACGTTGTTGGTACTGGTAGAGGTGTTGTTGGATCAGATAAATATATTACTAAATCTTATACAGGGGATGGTAATACATTAACCTTCGCAGTCACAACATATGGTGGAGGCATCAAACACTCTGATGATTCACTCTTAGTATTCCTCAATGGTGTAGCACAGATTGCAGGAACTAACTACACAGTGGATACAAATGGTGCTAACGTTGTATTCTCATCTGGGGATGCACCTCTATCAACGGACACAGTTCACATCTTAGAATTACCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c203b8aa3146d06eee42f0698aa6cf6b31695bab4e5f8c92a144d8e8f664790f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3695
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-RSM3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank