Protein

View in Explore
Genbank accession
XBS47578.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MYTFVRALAVEPGTNKRWLQVDISTTPTSTLLTKYRQIYVVLTDGITDTELTLNLEDVAVGIQTNVGTISDYLTANGNKTLPTTVGSPVVVRNNAIFSDLWEAGFWADSIDYNVGAGVDLPQELKPHVVVKPDDPGSQVGYDYLTMRQKILPNVNGFYHNSAADSKGYYIVDGNKSRMKSGANQLGLLSFGTFGTFDIEAITADMLSFDLDPTTGLVDKVNIKFTNCDLCVQTPILILGGYMLMPDNDQCLLTNTNVFTFKTWKYPFLERYFESEPYLDFSAFNIQHQTDNPNWVVAQNFRSQDYLTKYFTMSQSFMVLLDTTTLVIERSYPEKQTVPHTYMSWEEPKWPLVAGEGKHEVYWKQYEAGGWMLRCHDTFKRNYLFNTVGTADRVAVDNQMWMGKAGTLGDAMFVKLIEEEIQIKTQ
Physico‐chemical
properties
protein length:425 AA
molecular weight: 48124,97390 Da
isoelectric point:4,85782
aromaticity:0,12235
hydropathy:-0,23529

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XBS47578.1
1 425
Domain Start End Length (AA) Confidence
N-terminal 1 158 158 0,0157
Central domain 159 357 200 0,2374
C-terminal 358 425 67 0,9716
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-158
Central
159-357
C-terminal
358-425

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage vB_BgluM-SURPRISE13
[NCBI] 		3159457 No lineage information
Host Burkholderia glumae LMG 2196 = ATCC 33617
[NCBI] 		1176492 Pseudomonadota > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia glumae LMG 2196 = ATCC 33617

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XBS47578.1 [NCBI]
Genbank nucleotide accession
PP856017 [NCBI]
CDS location
range 68415 -> 69692
strand -
CDS
ATGTACACCTTCGTTCGAGCACTCGCCGTTGAACCCGGCACCAACAAACGCTGGTTGCAGGTCGACATTTCGACGACGCCTACCAGTACCCTCCTGACCAAATACCGCCAGATTTACGTTGTCCTGACGGACGGAATCACCGACACTGAGCTCACGCTTAACCTGGAAGATGTCGCGGTTGGTATCCAGACCAATGTGGGTACGATTTCAGACTATCTGACCGCGAATGGCAATAAAACTTTACCGACCACTGTAGGTAGCCCTGTGGTGGTCAGAAACAACGCAATCTTCAGCGATTTGTGGGAAGCTGGCTTCTGGGCAGACTCGATCGACTACAATGTCGGTGCGGGTGTTGATCTGCCTCAGGAACTGAAACCTCACGTCGTTGTGAAGCCGGACGATCCTGGTTCTCAGGTTGGTTACGACTACCTGACAATGCGACAAAAAATCCTGCCGAACGTGAATGGTTTCTATCATAACTCGGCGGCTGATTCCAAAGGCTACTATATTGTCGACGGCAACAAGTCGCGCATGAAGTCTGGTGCGAACCAGTTGGGCCTGCTGTCGTTCGGTACATTCGGCACGTTTGACATCGAGGCAATCACTGCCGACATGTTGTCGTTCGATCTGGATCCCACGACTGGTCTGGTCGACAAGGTCAACATCAAGTTCACGAACTGCGACTTGTGTGTTCAGACTCCGATCCTCATTCTCGGCGGCTACATGCTGATGCCGGATAACGATCAGTGTCTGCTTACCAACACGAACGTCTTCACGTTCAAGACCTGGAAGTATCCGTTCCTGGAGCGTTACTTCGAGAGCGAACCGTATCTGGATTTCTCGGCGTTCAACATCCAGCATCAGACGGACAATCCGAACTGGGTGGTTGCACAAAACTTCCGCAGTCAGGATTACCTGACCAAGTACTTCACCATGAGTCAATCATTCATGGTGTTGTTGGATACGACGACGCTGGTGATCGAGCGTTCCTATCCGGAAAAGCAAACCGTTCCCCACACATACATGTCGTGGGAAGAGCCCAAGTGGCCGTTGGTTGCAGGCGAAGGCAAGCATGAAGTCTACTGGAAACAATACGAAGCCGGTGGCTGGATGCTGCGTTGCCACGACACCTTCAAACGCAACTACCTCTTCAATACTGTTGGCACTGCCGACCGTGTTGCGGTGGACAACCAGATGTGGATGGGTAAAGCAGGAACATTGGGAGATGCGATGTTCGTGAAACTCATCGAAGAAGAAATTCAGATTAAAACACAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e12630d842ee3babcea4831dfb91c7a9f6ce2ffb7036525667571f4e22f407e2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2685
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of the novel Burkholderia jumbo bacteriophage Surprise13 Supina,B.S.I. and Dennis,J. 2023-10-26 — GenBank